LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g2925	ATGGAAGCTAAGAGTGGGCTTTTTGCAGGGTCTCTTAATAGCAATGAACTTGTGGTCATCCAAAAACACAATGAGCCTAAGGCAGTGAAAAACTTGGATGGTCAAGATTGTGAGATATGTGGTGATTCTGTAGGGCGTACAGTAGATGGAGACTTATTTGTAGCTTGTGAAGAGTGTGGCTTCCCTGTCTGCAGGCCATGCTATGAGTATGAAAGAAGGGAAGGGACTCAAAATTGCCCTCAGTGTCATACAAGATACAAACGTATCAAAGGAAGTCCAAGAGTGGAGGGAGATGAAGATGAAGAAGATGTTGATGATATTGAATACGAATTTAAAATGGAAGAAGAAAAGTACAAGCTTAAGCATGAAGAGAAAATAAGTAGCAGAGATGATGATGAGTATGAGGAGCAGCACTTATCTTCCTACAGTGGTGCAAAATTAGATAACAAGGAGAAAACAGATGAGTGGAAGTTGCAGCAAGGGAATCTGTTGATTGAAACTGATGCAGTTGATCCTGAAAAGGCCATGAAAGATGAAACTAGACAGCCACTATCAAGGAAAGTAGCAATACCTTCAGGAAGACTCAGTCCTTATAGAATGATGGTTGTGGCTAGGCTCATCCTTCTATTACTCTTCTTTGAGTATAGAATCTTCCATCCAGTACCTGATGCAATTGGACTTTGGTTCATATCTGTATCATGTGAAATCTGGCTTGCATTTTCATGGATAGTTGATCAAATTCCCAAATGGTTTCCCATCGATCGCGAGACATACCTCGATCGCCTTTCAGTCAGGTTTGAGCCGGAAAACAAGCCCAATATGCTTTCTCCGATAGATATCTTTGTAACAACCGCAGATCCAATCAAGGAACCACCTCTTGTTACAGCAAATACTATTCTTTCAATTTTGGCACTAGATTATCCTGCACAGAAAATTTCATGTTACGTTTCTGATGACGGTGCATCCATGCTCACCTTTGAAGCTCTTCAAGAAACAGCTGAATTCGCGCAAAAATGGGTACCGTTCTGTAAACAATTCTCTGCAGAGCCGCGAGCACCTGAAAAGTACTTCTCCGAGAAGATAGACTTTCTTAAGGATAAGCTTCAACCCACATATGTAAAAGAACGCCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGAATAAATGCACTTGTGGCTAAATCCATGAGAGTTCCCTCAGAAGGTTGGAGTATGAAAGATGAAACACCATGGCCAGGAAACAACACAAAAGATCATCCAAGTATGATACAAATACTTCTTGGTCACAATGGAGGAGACAATGAAGGAAATGAACTTCCATCTCTTGTCTACATTTCTAGAGAGAAAAGGCCTGCATTTCAACATCACACAAAAGCCGGTGCAATGAACGCCTTGCTTCGTGTATCGGCAGTGTTGAGCAATGCTCCTTTTGTACTCAACTTGGATTGCAATCATTATGTGAATAACAGTAAAGTTGTGAGAGAAGCCATGTGTTTCTTTATGGACATTCAGCTTGGGAATAGTATTGCTTTTGTTCAGTTTCCACTAAGATTTGATAGTCTTGATAGGAATGATCGTTATGCCAACAAAAACACTATTTTATTTGATATCAACTTGAGGTGTCTAGATGGAATTCAAGGACCTGTTTATATTGGATCAGGTTGTATATTCAGAAGGAAAGCTTTAAACGGCTTTGATCCTCCTAAGGCATCAAAACGCTCTCGAGTCGTGCAAGTTCACTCAAAACAGGATGAAAATGAAGATGATGGGAGCATTATAGAAGCAACCGATGAAGAGAAGCAGCCATTGCAATTAGATAAGGATACTGAAAATAAATTTGGAAAGTCTACACTCTTCATGAATTCTTCATTGACAGAAGAAGGTGGTGTAGATCCTTCTTCAACTCAAGAAGTCCTGCTTAAAGAGGCCATTCATGTCATGAGCTGTAGCTACGAAGACCGGACACTTTGGGGATACGAGGTCGGTATGAGCTATGGATCTATAGCATCAGATATTCTAACAAGTTTGAAGATGCATACTCGCGGTTGGAGATCGGTATACTGCATGCCGAAAAGAGCTGCTTTTAGGGGAACAGCTCCAATAAATCTTACAGAAAGACTTAACCAAGTTCTTAGATGGGCAGTAGGATCGCTTGAGATCCTATTCAGCCGCCACTGTCCATTATGGTATGGTTTCAAGCAAGGAAGACTCAAGCTTCTCCAAAGGATTGCCTATATAAACAGCACTGTCTACCCTTTTAGTGCATTACCTCTCATAATCTATTGTATCGTTCCTGCCGTCTGCTTGCTTACCGACAAATTCATCACACCATCGGTAGGCACTTTTGCAAGTCTAGTATTCATTTCTCTATTCATCTCAATCTTTGCCTCTGCTGTTCTTGAATTGAGATGGAGTGGAGTTAGTCTTGAGGAATGGTGGAGAAATCAACAATTTTGGGTCATTGGAAGTGTATCAGCACACCTCTTTGCAATTATACAAAGCCTTATGGGAGGATTCCTTGGAAAACTTAATGCACATTTCAGCATTGTTTCGAAGGCACCGGACGACGATGGCGAGTTTAATGAGCTGTACACCATTAGATGGACAGTACTACTAATACCTCCAACAACAGTCACAATAATCAACATTATTGGTATTGTTGCTGGTTTCACAGATGCTATAAATAGTGGTGAACATGAATGGGGAGCATTGATTGGGAAACTGTTCTTTGCTTCATGGGTTATTGCTCATCTTTATCCATTCCTTAAAGGACTAATGGGAAGACAGAATAGAACACCAACTCTTGTTGTCATTTGGTCTGTGCTTTTGGCTTCTATCTTTTCCTTGGTTTGGGTAAGAATTGACCCTTTTGTGTTGAAAACTAAGGGGCCTGATGTTAAGCAATGTGGAATTAGTTGTTGA	2928	0.4054	MEAKSGLFAGSLNSNELVVIQKHNEPKAVKNLDGQDCEICGDSVGRTVDGDLFVACEECGFPVCRPCYEYERREGTQNCPQCHTRYKRIKGSPRVEGDEDEEDVDDIEYEFKMEEEKYKLKHEEKISSRDDDEYEEQHLSSYSGAKLDNKEKTDEWKLQQGNLLIETDAVDPEKAMKDETRQPLSRKVAIPSGRLSPYRMMVVARLILLLLFFEYRIFHPVPDAIGLWFISVSCEIWLAFSWIVDQIPKWFPIDRETYLDRLSVRFEPENKPNMLSPIDIFVTTADPIKEPPLVTANTILSILALDYPAQKISCYVSDDGASMLTFEALQETAEFAQKWVPFCKQFSAEPRAPEKYFSEKIDFLKDKLQPTYVKERRTMKREYEEFKVRINALVAKSMRVPSEGWSMKDETPWPGNNTKDHPSMIQILLGHNGGDNEGNELPSLVYISREKRPAFQHHTKAGAMNALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNSIAFVQFPLRFDSLDRNDRYANKNTILFDINLRCLDGIQGPVYIGSGCIFRRKALNGFDPPKASKRSRVVQVHSKQDENEDDGSIIEATDEEKQPLQLDKDTENKFGKSTLFMNSSLTEEGGVDPSSTQEVLLKEAIHVMSCSYEDRTLWGYEVGMSYGSIASDILTSLKMHTRGWRSVYCMPKRAAFRGTAPINLTERLNQVLRWAVGSLEILFSRHCPLWYGFKQGRLKLLQRIAYINSTVYPFSALPLIIYCIVPAVCLLTDKFITPSVGTFASLVFISLFISIFASAVLELRWSGVSLEEWWRNQQFWVIGSVSAHLFAIIQSLMGGFLGKLNAHFSIVSKAPDDDGEFNELYTIRWTVLLIPPTTVTIINIIGIVAGFTDAINSGEHEWGALIGKLFFASWVIAHLYPFLKGLMGRQNRTPTLVVIWSVLLASIFSLVWVRIDPFVLKTKGPDVKQCGISC*	976

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g2925	975	Pfam	Zinc-binding RING-finger	27	104	IPR027934	-
	Mal5g2925	975	ProSiteProfiles	Zinc finger RING-type profile.	37	83	IPR001841	-
	Mal5g2925	975	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	20	109	IPR013083	-
	Mal5g2925	975	MobiDBLite	consensus disorder prediction	571	609	-	-
	Mal5g2925	975	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	419	569	IPR029044	-
	Mal5g2925	975	SUPERFAMILY	RING/U-box	22	105	-	-
	Mal5g2925	975	MobiDBLite	consensus disorder prediction	579	609	-	-
	Mal5g2925	975	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	291	768	IPR029044	-
	Mal5g2925	975	PANTHER	CELLULOSE SYNTHASE	1	975	-	-
	Mal5g2925	975	CDD	mRING-HC-C4C4_CesA_plant	35	85	-	-
	Mal5g2925	975	MobiDBLite	consensus disorder prediction	122	141	-	-
	Mal5g2925	975	Coils	Coil	376	396	-	-
	Mal5g2925	975	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	1	975	-	-
	Mal5g2925	975	Pfam	Cellulose synthase	586	969	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Mal5g2925	975	Pfam	Cellulose synthase	278	579	IPR005150	GO:0016020\|GO:0016760\|GO:0030244

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g2925	Mal-Chr5	87085595	87091129	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g2925	1	975	Cell Wall Biosynthesis	AT5G17420	64.563	0.0	1377

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g2925	K10999		-	gmx:100777270	1578.15