Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2910 ATGGATGAAGTTGGTAGTAGTAGCAGCTGTGAGTGGAGTAGAGAGCAAGATAAAGCATTTGAAATTGCATTGGCAACTCATCCTGAGGACGCGGTTGATCGATGGGAGAAAATTGCGAAGGATGTACCTGGGAAAACTTTAGAAGAGATTAAGCGTCACTATGTGATTTTGTTTGATGATATTCACCACATTGAATCTGGTTTTGTTCCTCTGCCAGATTACGATTCTTTTGCAGAGAGCTCAAGGAAGCGTGCTAGTGAAGGAGGAGCTGTCAAAAAGGGATCTAAGGCTTCGAGTTCTTATCATGAACGGCGAAAGGGTGTTCCTTGGACAGAAGCTGAACATAGGTTATTTCTTCAAGGCGTGGAGAAACATGGATGGGGTGACTGGCGAAGTATATCAAGGTACAGTGTGGTGACAAGGACACCTACACAAGTAGCAAGCCATGCTCAGAAATACAAAATCCGTCAGGATTCATTGAAAGAGAAGAAAGAAAGAAAGAAGCGATCCAGCATACATGATGTCACCTATGTCAAAAATGGAGACATTTCACCACCTGAAAGACCAATTACCTGTCAATCAAGCAATTCTGCTGCAAGTTCTGCCGGACAATCAGCCGCAGCACCACCCGCTGGAATCAGAACTCTAGATAATCCTCCAGCCCCATCTGCTGGAACACATGCTGCTCCTAGGACCGGGCAACCTATAGGAGGACCGGTTGTATCTGCAGTTGGTACTCAAGTGAATCTTACTGCTCCAGGAAACATGGATTATGGCCTTGGACCAGTTTCTGAGACAGTCATGCTAGGTGTACCAATGAATTTGGGTCCTATCACATATACCATGCAACATACATATGCTCACTCATGA 870 0.4494 MDEVGSSSSCEWSREQDKAFEIALATHPEDAVDRWEKIAKDVPGKTLEEIKRHYVILFDDIHHIESGFVPLPDYDSFAESSRKRASEGGAVKKGSKASSSYHERRKGVPWTEAEHRLFLQGVEKHGWGDWRSISRYSVVTRTPTQVASHAQKYKIRQDSLKEKKERKKRSSIHDVTYVKNGDISPPERPITCQSSNSAASSAGQSAAAPPAGIRTLDNPPAPSAGTHAAPRTGQPIGGPVVSAVGTQVNLTAPGNMDYGLGPVSETVMLGVPMNLGPITYTMQHTYAHS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2910 289 PANTHER TRANSCRIPTION FACTOR KUA1 10 285 - -
Mal5g2910 289 Coils Coil 150 170 - -
Mal5g2910 289 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Mal5g2910 289 PANTHER TRANSCRIPTION FACTOR SRM1 10 285 - -
Mal5g2910 289 MobiDBLite consensus disorder prediction 187 204 - -
Mal5g2910 289 ProSiteProfiles SANT domain profile. 110 158 IPR017884 -
Mal5g2910 289 Gene3D - 10 63 - -
Mal5g2910 289 ProSiteProfiles Myb-like domain profile. 12 58 IPR001005 -
Mal5g2910 289 SMART sant 106 156 IPR001005 -
Mal5g2910 289 SMART sant 8 60 IPR001005 -
Mal5g2910 289 Pfam Myb-like DNA-binding domain 11 54 IPR001005 -
Mal5g2910 289 Pfam Myb-like DNA-binding domain 109 154 IPR001005 -
Mal5g2910 289 Gene3D - 108 160 - -
Mal5g2910 289 ProSiteProfiles Myb-like domain profile. 102 154 IPR001005 -
Mal5g2910 289 MobiDBLite consensus disorder prediction 83 107 - -
Mal5g2910 289 SUPERFAMILY Homeodomain-like 103 158 IPR009057 -
Mal5g2910 289 SUPERFAMILY Homeodomain-like 11 66 IPR009057 -
Mal5g2910 289 MobiDBLite consensus disorder prediction 145 239 - -
Mal5g2910 289 MobiDBLite consensus disorder prediction 154 175 - -
Mal5g2910 289 CDD SANT 11 54 IPR001005 -
Mal5g2910 289 CDD SANT 109 154 IPR001005 -
Mal5g2910 289 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 106 157 IPR006447 GO:0003677
Mal5g2910 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 158 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2910 Mal-Chr5 86581291 86590576 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g2910 Myb_DNA-binding 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2910 - - gmx:100820272 315.849