Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2892 ATGACCCATTTAGTTATTTTCATCATAGTGATTTTAGCTATTGTGTTTTTCATTTCTTGTATCCTCCAACTGTTTGTTAGATTTCTCATAAGAAAAAGAAATTCTTCATCATCAAATTCTCAATCCAATAATAACTACCCTCAAATGTCTGAACCTGATCCTTATCAAAGACAATTGCAACAACTCTTCAATCTTCATGATTCAGGTTTAGATCAAGCTTTCATTGATGCTCTACCAGTTTTCCTTTACAAAGAGATAATAGGTTTGAAGGAACCATTTGATTGTGCTGTTTGTCTTTGTCAATTCACAGAACAAGACATGTTGAGATTGTTGCCTCTTTGTAATCATGCTTTTCATGTTGATTGCATTGATACATGGCTTCTTTCGAATTCAACTTGTCCTCTTTGTAGAGGAAGTCTTTATGAACATGGATTTTCCATTGAAAATCCTGTTTATGATTTTGAGAGTTTAAGGGAAGAAGATAGGGTTTTTGATAGTGTTGTTGGTGAGGGTAATTATGTTAACAAGCATGCTGAAAATCATATAATGAGTGGGAAAAGGGTTTTTTCTGTTAGGCTTGGAAAGTTTAGAAGCTCAAATAATGGAGAGGGGGGTGTGGAAAGAAATGAAGGGGAGTGTAGTAGTACAACTAAAAGTATTGTTGATGATGTAAGGAGATGCTATTCAATGGGGTCTTACCAATATGTGGTTGCTGATTCAGATTTGGTAGTGGCTTTGTGCCCTAATAGAGGTGAGGGAGGAGGAAATAGTGCTAGTATGAGACAATTGAAAGGAGGGTTTGGTCAAAATGGGAATTGTTCCATTGATGGTGGAGGAGATGTTGAGGGGAAAAAAATCAATGTTGCTAGGAAAGGTGAAAGCTTTTCTATTTCAAAGATTTGGTTATGGTCTAGGAAGGATAAGGTATCAAGTTCATCACAATCTCATTTGGTTAATTCAAATGTCACTTCAACTTTGCCATGGATGAATGAATAG 996 0.3574 MTHLVIFIIVILAIVFFISCILQLFVRFLIRKRNSSSSNSQSNNNYPQMSEPDPYQRQLQQLFNLHDSGLDQAFIDALPVFLYKEIIGLKEPFDCAVCLCQFTEQDMLRLLPLCNHAFHVDCIDTWLLSNSTCPLCRGSLYEHGFSIENPVYDFESLREEDRVFDSVVGEGNYVNKHAENHIMSGKRVFSVRLGKFRSSNNGEGGVERNEGECSSTTKSIVDDVRRCYSMGSYQYVVADSDLVVALCPNRGEGGGNSASMRQLKGGFGQNGNCSIDGGGDVEGKKINVARKGESFSISKIWLWSRKDKVSSSSQSHLVNSNVTSTLPWMNE* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2892 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 5 326 - -
Mal5g2892 331 CDD RING-H2_PA-TM-RING 94 137 - -
Mal5g2892 331 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Mal5g2892 331 Pfam Ring finger domain 94 137 IPR001841 -
Mal5g2892 331 SMART ring_2 95 136 IPR001841 -
Mal5g2892 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 144 IPR013083 -
Mal5g2892 331 SUPERFAMILY RING/U-box 74 143 - -
Mal5g2892 331 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2892 Mal-Chr5 86179917 86180912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2892 21 313 C3H Transcription Factor Family AT2G18650 39.062 4.58e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2892 - - gmx:100818135 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1672 6 31349021 31350142 Mal5g2892 5 86179917 86180912 PCT