Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2869 ATGGGTCGTGCAAAAATACCTATGAAATACATTCAAAATGAGACATCTCGCAAAATGGCTTTCAGACAAAGAAAAAAAGGATTAATAAAGAAAATTTCTGAATTTTGTATTAGGTCTGAAGAAAAAGCTTGCTTGATTGTATATGATGGTGATGATAATAATGTTGGGCCAACGATATGGCCAGAAGACCCTACAATTCTAAACTCCATGCTTCAAGAATATGAGCATCAAAAGATTGAGAAAACTCATGAGATATTTGATGTCAACGACTACTTTAAAAATAAGAAAGATATGACTGAAGCTGAGATCACCAAAGTGCGTAAAGCTATCCTCAAGAAGAATTATTCAACTTGGTATCCAGAGTTTAATAACATGGAAGAGCACCAACTTAGAGATTTCATTGCTACTCTAGATTCTAAGATTCAGGCTTGTGATCACAAAATTAACATGCTGAAAAATATGCAACAAAGTGAAACTAATTTCCTACAAAACAATGCTCACATGCAAAATATGGTTCAAGAGAGTGTTGTTTCCTCACATTCAAAACAAGTCAATGGCATACATAGTATCCCTCAAATGCAACAACACATCAACAATATTAGTGAGATGGTGGAGAAGACCAAACATGATGATTTGCCGTCATCAACAAACCAACTTCATGATATTAGAAGGATGGTTAATTTCAATCATGGTGATTTGCCTTCTAGTACATCAACAAACCGACTTAGTGAGCTTGTGGAGTGGGGTCAAGTTGTTAATCCTGATTATATTAGTGAAAGCGTGGAATTCACTATTCATGGAGATTTTCCTCCAAGTTCATCAACAAACCGACTTAGTGAGCTTGTTGAGTTGGGTCATGTTGTTAATCCTGATTATATTAGTGAAAGTGTGGAATTCACTAGTCATGGTGAATTTCCTCCAAGTTCATCAACAAACCGACTTAGTGAGCTTGTTGAGTGGGGTCAAGTTGTTAATCCTGATTATATTAGTGAAAGTGTGGAATTCACTAGTCACGGTGATTTGCCTCCTAGTTCATCAACAAACCAACTTAGTCAACTTGTTGATCATGATGACTGGATGAAATATCTAGATGATGTTGTTTTGGCCTGGGCTAGTCAACCTGATCAATTTGCTTGGAAAGATCCTTCTTTTTCATCTCAAAATGAAGAGGAAAGTGCAAATTTGGATGGTGAGAGACATGTCAGTTTCTGA 1212 0.3622 MGRAKIPMKYIQNETSRKMAFRQRKKGLIKKISEFCIRSEEKACLIVYDGDDNNVGPTIWPEDPTILNSMLQEYEHQKIEKTHEIFDVNDYFKNKKDMTEAEITKVRKAILKKNYSTWYPEFNNMEEHQLRDFIATLDSKIQACDHKINMLKNMQQSETNFLQNNAHMQNMVQESVVSSHSKQVNGIHSIPQMQQHINNISEMVEKTKHDDLPSSTNQLHDIRRMVNFNHGDLPSSTSTNRLSELVEWGQVVNPDYISESVEFTIHGDFPPSSSTNRLSELVELGHVVNPDYISESVEFTSHGEFPPSSSTNRLSELVEWGQVVNPDYISESVEFTSHGDLPPSSSTNQLSQLVDHDDWMKYLDDVVLAWASQPDQFAWKDPSFSSQNEEESANLDGERHVSF* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2869 403 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Mal5g2869 403 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Mal5g2869 403 CDD MADS_SRF_like 2 77 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal5g2869 403 Gene3D - 13 114 IPR036879 GO:0003677|GO:0046983
Mal5g2869 403 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Mal5g2869 403 PANTHER PROTEIN, PUTATIVE-RELATED 3 248 - -
Mal5g2869 403 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Mal5g2869 403 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal5g2869 403 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal5g2869 403 MobiDBLite consensus disorder prediction 381 403 - -
Mal5g2869 403 PANTHER MADS BOX PROTEIN 3 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2869 Mal-Chr5 85189080 85190291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2869 1 142 Type I MADS-box Gene Family AT5G55690 28.082 1.35e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal5g2869 SRF-TF 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2869 - - mtr:MTR_4g045977 336.65