Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2843 ATGGAAGCACTGATTACGTTTATTGAGTGGTTGGGTTGTTGCTGTAGTGGTGGAAAAATTGAGAAGGTGAAGTTGAAAGAAGAAATGGGTGAAGATTATCATTTGGCTCCCATTTGTAGGGATACCCTTTTTCATCATCCAGTTAGAACAAAGACTTGTGAGGCTCTTGCCAAGCTTCCTTTTTCAATGACTCTTTATTCTAGTGTCCATGCAGAGGTTGCAATATCACAACAACCAAGATGGGTTATCCATGAGGACTCAGTTGGAACTCAAGTTTTGATCCCTATTATTGGCGGTCTTGTTGAGCTTTTCACTACAAAGCATATCCCAGAAGATATAAATATCATGCAGTTCATATCAGCACACTGTTGTGTCTCTATAAAGCAAGAAGCCATTTCTGCTCATATCTGCACCAATATGAACGTCAATGAGAGCATTGAAGGACCCTCCGGTGGATCTATTCCTTCAACTGAACACTTATCATTTGATTCAAACTTTGGTTGCTTGATTCCTCACGAATATCTGAATCAACCACTTAAAAGCCAAAGACACAATAAAATTTCAGCAAAGCGTCGGTGTGGTTTGAGTGTCCATTGTGGCAATGGCGAAGAAGATAAAGAAAAAATTGATAAGGAGCCTCAAAAGAAAGCGTGTCATGCTAAAAATCTCATCACAGAGAGGAATAGGAGGAACAGAATAAAACAAGGGCTTTTTACTCTAAGGTCTCTAGTCCCAAATATAACCAAGATGGACAGAGCAGCAATTCTTGAGGATGCAATTGAATATATAATGGAATTGCAGAGGCAAGAGATAGAGCTTCAAGAAGAGGTGAAGGCTTTAGAAGTTGAGGATTGTGGGAAGAGCACACTACAAACAAGGGTGCAAAAAGACAAAGTTGCAGAGGGAACCAGAAAACTACCTCTCACTGGTCTTAATCAAAGTTCGTCTGATTCCACGAGAAAGACACAGATGGAGTTGCAAGTAGAAGTGAATCACGTCGGCGGAACAGATTTTATGATTAAGTTGTGCTGTGAGCAGAAGCAAGGTGTGTTTTCAAGGTTGATGGAAGCAATAGATTCATTTGGACTGCATGTGTTAAATGCAAACATGACCACATTTGATGGAAAAGTTCTGAACATTCTTATGGTTGAGGCAACTGCGCTGGATATTCACCCGAAGAAACTCAGGGAGTATTTGATGCAGCAAACAAGGTAA 1215 0.4033 MEALITFIEWLGCCCSGGKIEKVKLKEEMGEDYHLAPICRDTLFHHPVRTKTCEALAKLPFSMTLYSSVHAEVAISQQPRWVIHEDSVGTQVLIPIIGGLVELFTTKHIPEDINIMQFISAHCCVSIKQEAISAHICTNMNVNESIEGPSGGSIPSTEHLSFDSNFGCLIPHEYLNQPLKSQRHNKISAKRRCGLSVHCGNGEEDKEKIDKEPQKKACHAKNLITERNRRNRIKQGLFTLRSLVPNITKMDRAAILEDAIEYIMELQRQEIELQEEVKALEVEDCGKSTLQTRVQKDKVAEGTRKLPLTGLNQSSSDSTRKTQMELQVEVNHVGGTDFMIKLCCEQKQGVFSRLMEAIDSFGLHVLNANMTTFDGKVLNILMVEATALDIHPKKLREYLMQQTR* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2843 404 Gene3D - 204 283 IPR036638 GO:0046983
Mal5g2843 404 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 39 403 - -
Mal5g2843 404 PANTHER TRANSCRIPTION FACTOR BHLH90 39 403 - -
Mal5g2843 404 CDD ACT_UUR-ACR-like 339 401 - -
Mal5g2843 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 266 IPR011598 GO:0046983
Mal5g2843 404 SMART finulus 223 272 IPR011598 GO:0046983
Mal5g2843 404 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 120 IPR025610 -
Mal5g2843 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 220 282 IPR036638 GO:0046983
Mal5g2843 404 Pfam Helix-loop-helix DNA-binding domain 224 267 IPR011598 GO:0046983
Mal5g2843 404 Coils Coil 256 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2843 Mal-Chr5 84375701 84379593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2843 7 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 31.818 5.69e-62 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal5g2843 bHLH-MYC_N 4.5e-08 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2843 - - mtr:MTR_8g064700 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2843 5 84375701 84379593 Mal5g2843 5 84375701 84379593 ECH