Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2820 ATGGTTTGTCGTCAAGTAATCAACTCCATCTTTTGGTGCTTTATTTTACTTGTTTTTCTGATCACATTTTTCACTACAAAGGTTAGTTCTACCAAGCAATCTAAAATAGAAAGCATGGAAATGAATGTGATTGATCAGTGTTGGAGATTTAATCCTCAATGGAGGAAACATCGGCAACAACTTGCCACTTGCTCAGTGGGCTACACGGGAAAAATGACAAACAACATAGGTAAAGGCCTAATCCATTATAAAGTTACTGATCCTAGTGACCATCCTTTAAACCCAAGACCAGGCACCTTAAGATATGGAGCTTCTAAGATTCAAGGTAAAGTTTGGATCACATTCCAAAGGGACATGAACATTAATCTTCTGAGACCCCTTCTCATTAGTAGTTTTACCACCATTGACGGTCGAGGTGTCGATGTCCACATCGCTGATAATGCATGCTTGATGATATATAAGGCAACCAACATAATCATCCACGGAATCAGGGTTCATCATTGTCGACCTCAAGCTCCTGGAATGGTAATGGGTCCCAATGGAAACATAATGCCTTTGGGTCAAGTGGATGGAGATGCAATCAGATTGGTTTCAACTTCAAATATATGGATTGATCATAACACACTCTATGAATGTCAAGATGGTCTTCTAGACGTTACACGAGGTTCCACTAATATAACAATCTCCAACAATTGGTTTAGAGAACAAAATAAAGTTATGCTTCTTGGACACGATGATGGATTTGTGAGAGACAAAAATATGAAAGTGACTGTTGTGTACAACTATTTTGGACCTAATTGCCACCAACGCATGCCTAGAATCCGTCACGGATATGCACATGTTGCGAACAACCTATACATGGGATGGGTGCAATATGCAATAGGTGGAAATATGGAACCAAGCCTTAAGAGTCAATCAAACCTCTTCATAGCACCAACAATAGGGAATAAAGAGGTGACATGGAGGAAAAATAGTAATGGAATTGGAGACACGTGGGAATTTTATTCAGTTGGGGATGCTTTTGAAAATGGAGCATCATTTATAGAAACAAAAGGTGGACATGTGACAAAACCCAATTATAGCCCTGAACAAAACTTTGAAGTTGTTGATGCCAAATCTGTGAGATCATTGACTAGATCATCGGGAGTGTTACGATGCAGTAAAACCTCAATATGTTGA 1179 0.3919 MVCRQVINSIFWCFILLVFLITFFTTKVSSTKQSKIESMEMNVIDQCWRFNPQWRKHRQQLATCSVGYTGKMTNNIGKGLIHYKVTDPSDHPLNPRPGTLRYGASKIQGKVWITFQRDMNINLLRPLLISSFTTIDGRGVDVHIADNACLMIYKATNIIIHGIRVHHCRPQAPGMVMGPNGNIMPLGQVDGDAIRLVSTSNIWIDHNTLYECQDGLLDVTRGSTNITISNNWFREQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNLYMGWVQYAIGGNMEPSLKSQSNLFIAPTIGNKEVTWRKNSNGIGDTWEFYSVGDAFENGASFIETKGGHVTKPNYSPEQNFEVVDAKSVRSLTRSSGVLRCSKTSIC* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2820 392 PANTHER PECTATE LYASE 18-RELATED 5 389 IPR045032 GO:0030570
Mal5g2820 392 PANTHER PECTATE LYASE 5 389 - -
Mal5g2820 392 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Mal5g2820 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Mal5g2820 392 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Mal5g2820 392 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Mal5g2820 392 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Mal5g2820 392 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Mal5g2820 392 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Mal5g2820 392 SMART amb_all 118 315 IPR002022 -
Mal5g2820 392 Pfam Pectate lyase 129 309 IPR002022 -
Mal5g2820 392 SUPERFAMILY Pectin lyase-like 36 386 IPR011050 -
Mal5g2820 392 Gene3D - 41 385 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2820 Mal-Chr5 83898066 83899920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2820 72 319 Polysaccharide Lyase AT5G09280 67.742 1.40e-135 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2820 K01728 - gmx:100811216 684.1