Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2793 ATGGGGAAAGAATCATGGTCAGTGTTGATGCTCGAGGACAAGAAAATCCAGTTACAGCCGTTCAAAAAAAAGAAAAAGAAAATCCAGTTACAGAGTAATTCACGGAAAAGAGGCAGGGTTCAGTTGAAGAGGATAGAAAACAAGATCAATCGTCAGGTTACTTTCTCTAAAAGGAGAGCTGGACTTCTCAAGAAAGCTCATGAGATCTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAATATGCCACTGATTCTTGCATGGAGAAGATATTGGAGCGCTATGAAAGGTACTCCTATGCAGAGAGACAGCTTGTTGCAAGTGATTCAGAGTCACAGGGAAATTGGACCATTGAGTATACACGACTGAAGGCAAAGATTGATCTTTTGCAAAGAAACTATAGGCACTACATGGGAGAAGATTTGGGAACAATGAGCCTCAAAGAGCTTCAGAGTCTGGAACAGCAGTTAGATACTGCTCTCAAACTCATTCGTACACGCAGAAACCAACTCATGTACGAGTCAATTTCAGAGCTTCAGAAAAAGGAGAAAGTGATTCAAGAGCAGAATAACATGCTTGCAAAAAAGATCAAGGAGAAAGAAAAGATTGCAGCTCAGCAGCAAGCACAATGGGAGCATCCAAACCATCATGGAGTTAATCCAAATTACTTACTACAGCAGCAACTTCCAACTTTGAACATGGGTGGCAATTACCGTGAGGAAGCACCAGAAATGGGAAGGAATGAACTTGACCTTACCTTGGAACCATTGTATACTTGCCACCTTGGATGCTTTTGA 825 0.4158 MGKESWSVLMLEDKKIQLQPFKKKKKKIQLQSNSRKRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYSYAERQLVASDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLGTMSLKELQSLEQQLDTALKLIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKEKEKIAAQQQAQWEHPNHHGVNPNYLLQQQLPTLNMGGNYREEAPEMGRNELDLTLEPLYTCHLGCF* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2793 274 CDD MADS_MEF2_like 37 113 IPR033896 GO:0000977|GO:0045944
Mal5g2793 274 ProSitePatterns MADS-box domain signature. 37 91 IPR002100 GO:0003677|GO:0046983
Mal5g2793 274 Gene3D - 47 120 IPR036879 GO:0003677|GO:0046983
Mal5g2793 274 PRINTS MADS domain signature 72 93 IPR002100 GO:0003677|GO:0046983
Mal5g2793 274 PRINTS MADS domain signature 37 57 IPR002100 GO:0003677|GO:0046983
Mal5g2793 274 PRINTS MADS domain signature 57 72 IPR002100 GO:0003677|GO:0046983
Mal5g2793 274 ProSiteProfiles K-box domain profile. 122 212 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal5g2793 274 Coils Coil 185 219 - -
Mal5g2793 274 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 37 258 - -
Mal5g2793 274 PANTHER SERUM RESPONSE FACTOR HOMOLOG 37 258 - -
Mal5g2793 274 SUPERFAMILY SRF-like 37 126 IPR036879 GO:0003677|GO:0046983
Mal5g2793 274 Coils Coil 159 179 - -
Mal5g2793 274 SMART madsneu2 35 94 IPR002100 GO:0003677|GO:0046983
Mal5g2793 274 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 44 91 IPR002100 GO:0003677|GO:0046983
Mal5g2793 274 ProSiteProfiles MADS-box domain profile. 35 95 IPR002100 GO:0003677|GO:0046983
Mal5g2793 274 Pfam K-box region 118 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal5g2793 274 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2793 Mal-Chr5 83242765 83290155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2793 37 274 MADS-box Gene Family AT1G26310 65.476 2.70e-107 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal5g2793 K-box 2.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2793 K09264 - gmx:100810129 408.297