Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2758 ATGGATTACAACAGAGACGGCAACGTCGTTCAAATCATCACCACCGGCGGCGCCGCCGATAGCTGGTCCACCGACCAAGCTGATTGGGCGACGGAAGACGAGTATCGATACTGGAACGGAAATGACGCCGGCGGCGAAACCACACCGTCTTCGAATTCACGGGCGGGAAGCGAGCCGCCGAGCAAGAAATCGAGAAGCAATTCACAAGACGGAGGCGGAGGAAGCGGCGGTGGTGGTGGTGGATCGAATCGTGCGAAGGCGATTGGTAAAATGTTTTTTAAGACGAAACTATGCTGTAAGTTTCGTGTGGGGACTTGTCCTTATGTAACGAACTGTAATTTTGCTCATAGTGTGGAGGAGCTTCGTCGGCCGCCGGAGAATTGGCAGGAGATTGTGGCTGCTCATGAGGAAGAGAGGAATGTGATTGAGCAGCCAAGGGAGGAGTTTCAGATACCGACTATCGGGTCGAGTACTTTTGTAGGGGAGAGTATGAATAATAGGTCTTATAAGGGTAGACATTGTAAGAAATTTTATACTGAGGAAGGTTGTCCTTATGGTGATAGTTGTACTTTTCTTCATGATGAGCAATCGAAGAACCGCGAAAGTGTGGCGATTAGTTTGGGTCCGGGTGGTTATGGTGGTGGTGGTGGAGGTGGTAGTGTTGGTAGTGTTGGTGGAAGTGGTGTTGTTGTTGTTGCGGCTGGTGCGGCCGCGGTTGGGAATGGACCTAATTTGAAGCCTTCGAATTGGAAGACTAGGATTTGTAATAAGTGGGAGATGACTGGGTATTGTCCCTTTGGTAACAAATGCCATTTTGCTCATGGTGCTACAGAATTACATAGATATGGAGGTGGGCTAATGGAAGGAGAAAGCAGAGACGGTGTTTCTGCTGTTGCGTCTGACACAAAACAGGGAGTACCTTCAAAAAATCATGCTGATAATGTGGTTGCATCAACTCCTCCTATTGGTCATTCAGATATCTATCATATTGGAGTCCCTTCACAGAGGCCTTCCATTGTGAGTCAGATGCCCGGACAGAGAGCTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATACGGTGATTGGATCGATGACTTCGAATAG 1113 0.4834 MDYNRDGNVVQIITTGGAADSWSTDQADWATEDEYRYWNGNDAGGETTPSSNSRAGSEPPSKKSRSNSQDGGGGSGGGGGGSNRAKAIGKMFFKTKLCCKFRVGTCPYVTNCNFAHSVEELRRPPENWQEIVAAHEEERNVIEQPREEFQIPTIGSSTFVGESMNNRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGSVGSVGGSGVVVVAAGAAAVGNGPNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDGVSAVASDTKQGVPSKNHADNVVASTPPIGHSDIYHIGVPSQRPSIVSQMPGQRAHQKWKGPDKISRIYGDWIDDFE* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2758 370 Gene3D - 160 207 - -
Mal5g2758 370 MobiDBLite consensus disorder prediction 43 73 - -
Mal5g2758 370 SUPERFAMILY CCCH zinc finger 90 123 IPR036855 GO:0046872
Mal5g2758 370 MobiDBLite consensus disorder prediction 33 82 - -
Mal5g2758 370 SUPERFAMILY CCCH zinc finger 165 196 IPR036855 GO:0046872
Mal5g2758 370 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Mal5g2758 370 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 250 275 IPR000571 GO:0046872
Mal5g2758 370 ProSiteProfiles Zinc finger C3H1-type profile. 249 277 IPR000571 GO:0046872
Mal5g2758 370 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 367 IPR045877 GO:0003729
Mal5g2758 370 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 23 367 - -
Mal5g2758 370 ProSiteProfiles Zinc finger C3H1-type profile. 168 196 IPR000571 GO:0046872
Mal5g2758 370 Gene3D - 244 281 - -
Mal5g2758 370 Gene3D - 89 123 - -
Mal5g2758 370 SMART c3hfinal6 249 276 IPR000571 GO:0046872
Mal5g2758 370 SMART c3hfinal6 92 118 IPR000571 GO:0046872
Mal5g2758 370 SMART c3hfinal6 168 195 IPR000571 GO:0046872
Mal5g2758 370 Pfam CCCH-type zinc finger 172 194 IPR041367 -
Mal5g2758 370 SUPERFAMILY CCCH zinc finger 246 280 IPR036855 GO:0046872
Mal5g2758 370 ProSiteProfiles Zinc finger C3H1-type profile. 92 119 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2758 Mal-Chr5 81933321 81935989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2758 251 279 C3H Transcription Factor Family AT1G68200 62.069 3.56e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal5g2758 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2758 - - gmx:100788208 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2758 5 81933321 81935989 Mal5g2758 5 81933321 81935989 ECH