Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2754 ATGGCGCGTCCCGATTATCCAACAACATGGATTCCTTACATAAACAGCAAAGATTGTTCTCAAGGATTTTGTACCATGTATTGTCCACAATGGTGCTACATAGTTTACCCTCCACCACCACCACCAACTTTTCAATACCCTGATGATGATTCAAAACCTTATTTCTCTCCTCTTGTTATTGCAATAATGGGAGTCTTAGCCACTGCTTTTTTACTACTAGCATATTACACTCTAATATCCAAATATTGTGGTCACAGAGAAACTTCAAGAAGAAACACCACTGACCAAGTTGATGAATTACCACAAAATCGCCGCGAAAATTGTCAAGTTTCAACCTTTGGCTTAGATGATGCTCAAATAAAATCCATTGCAGTTTTTAGCTACAAAAAAGGAGATGATTTTTTTAGTAACACTATCACTGATTGTTCTGTTTGTTTAAGTGAGTTTCAAGATGATGAAAGTGTTAGACTTTTACCAATGTGTAACCATGTTTTCCATCTTCCTTGTATTGATAAATGGCTCAAATCTAACTCAAGTTGTCCTCTATGTCGTTCTAGTGTATTCACTTTGAATGCTTCAACACATCATGTTCAAGTTCCAGCTACAGTTATAGAACTTCCTTCAAGAAATGAAACATTTTCACAAGATCAACAAATAGTTGTGGAAGAAACAATGATGCATCATAGTAGAGTTGATTCGAAGGCTCCTTCATTGCGCGCTTTTAGTGATTTGTGTAACTTGCAAGGAAGAGAAAGAATAATTGAAATTAGAGATGAAGTTTGTGAATCCATTGGAAGGTCAGTGTCTATGGATCATTCATTTCAAAATGGTTTTTCAATTGGTGATGTGTTGAATATGAATGAAGATGAAGATTCTTGTGAAGAAGGGTGTTCTATGGACGGTGATTCATCGAAGAGATTACGAGGCGAAAGTAGTAAATCAAGGTACAAAAGAAGGGTGTTGCATTGTGTTATGAGTCCAATTGCAATGAAGAGATCGTTTTCTAATGGAAGATTTTCACTTGGTAAAATTGATAGAGGAAAAAGGCAGGGAAATTTGCATGTATGA 1068 0.3605 MARPDYPTTWIPYINSKDCSQGFCTMYCPQWCYIVYPPPPPPTFQYPDDDSKPYFSPLVIAIMGVLATAFLLLAYYTLISKYCGHRETSRRNTTDQVDELPQNRRENCQVSTFGLDDAQIKSIAVFSYKKGDDFFSNTITDCSVCLSEFQDDESVRLLPMCNHVFHLPCIDKWLKSNSSCPLCRSSVFTLNASTHHVQVPATVIELPSRNETFSQDQQIVVEETMMHHSRVDSKAPSLRAFSDLCNLQGRERIIEIRDEVCESIGRSVSMDHSFQNGFSIGDVLNMNEDEDSCEEGCSMDGDSSKRLRGESSKSRYKRRVLHCVMSPIAMKRSFSNGRFSLGKIDRGKRQGNLHV* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2754 355 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 345 IPR044675 -
Mal5g2754 355 MobiDBLite consensus disorder prediction 291 313 - -
Mal5g2754 355 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Mal5g2754 355 SMART ring_2 142 183 IPR001841 -
Mal5g2754 355 MobiDBLite consensus disorder prediction 298 313 - -
Mal5g2754 355 CDD RING-H2_PA-TM-RING 141 184 - -
Mal5g2754 355 Pfam Ring finger domain 141 184 IPR001841 -
Mal5g2754 355 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 345 - -
Mal5g2754 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 191 IPR013083 -
Mal5g2754 355 SUPERFAMILY RING/U-box 124 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2754 Mal-Chr5 81883694 81884761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2754 7 348 C3H Transcription Factor Family AT5G17600 38.378 1.19e-59 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2754 - - vun:114176645 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2754 5 81883694 81884761 Mal5g2754 5 81883694 81884761 ECH
Mal6g0700 6 10088054 10089163 Mal5g2754 5 81883694 81884761 PCT