Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2686 ATGGATGAATACCACTGTGATGCATACCCAAATTTTTCTTCCATTGATTATGACACACCAAATATTTCATCAAGCCCTAATGACAAGTATTTTAATATAGAACTTGAGTGCACAAATATGTTCGTTTTGAATGCTAGAAAGTTTGAAACTCATTCAGAAATAGAGTATCACACACTTTCAAATGTGTCAAACGGTGAACTGATGCAAGAAACTATCATTATATCATGGCTTTCTCAAACGGATATTCCTCAAGATGCTTTTAGGGTTGTAGTATCAAAACTCTTGGAATGTGCTCGTGATATGGTTAACAGGACACATAAGAATCGAAGGGTTCTTTCTATTCGAGTCGATCTTGTCGTAACAAGGGCTATTGAAGATGAAAGTGATGAAGAGGATAATAATTTTGAAGTAGATGATGATAGTGTTTTAGATGATAATGGTTTTGAAGTGGGTGATGAAAGTAGCGAAATCATTGAATACTCTGAAGATGAAGAAGATAACGGGTTGGTTCCTGCGGCAAAGTCATGTGTTGAGGGATTGAAGAAAGTTGAAAAGAAGGGAAAATGTGCTATTTGTTTGGAAAAATTTAAAGTTGGTGTTTTTATGCCATGTTTGCACATGTTTCATTCGAAATGTATTCGTGATTGGTTGGAGGTAGGCAATTCTTGCCCTTTGTGTAGGTTTAAGTTGCCAACTGAAACAAGTGAATGA 711 0.3572 MDEYHCDAYPNFSSIDYDTPNISSSPNDKYFNIELECTNMFVLNARKFETHSEIEYHTLSNVSNGELMQETIIISWLSQTDIPQDAFRVVVSKLLECARDMVNRTHKNRRVLSIRVDLVVTRAIEDESDEEDNNFEVDDDSVLDDNGFEVGDESSEIIEYSEDEEDNGLVPAAKSCVEGLKKVEKKGKCAICLEKFKVGVFMPCLHMFHSKCIRDWLEVGNSCPLCRFKLPTETSE* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2686 236 PANTHER F6A14.12 PROTEIN-RELATED 49 232 - -
Mal5g2686 236 SUPERFAMILY RING/U-box 188 232 - -
Mal5g2686 236 Pfam Zinc finger, C3HC4 type (RING finger) 188 226 - -
Mal5g2686 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 230 IPR013083 -
Mal5g2686 236 ProSiteProfiles Zinc finger RING-type profile. 189 227 IPR001841 -
Mal5g2686 236 SMART ring_2 189 226 IPR001841 -
Mal5g2686 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 49 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2686 Mal-Chr5 78529031 78529741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2686 143 233 C3H Transcription Factor Family AT5G01980 42.574 1.39e-15 73.6