Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal5g2686 | ATGGATGAATACCACTGTGATGCATACCCAAATTTTTCTTCCATTGATTATGACACACCAAATATTTCATCAAGCCCTAATGACAAGTATTTTAATATAGAACTTGAGTGCACAAATATGTTCGTTTTGAATGCTAGAAAGTTTGAAACTCATTCAGAAATAGAGTATCACACACTTTCAAATGTGTCAAACGGTGAACTGATGCAAGAAACTATCATTATATCATGGCTTTCTCAAACGGATATTCCTCAAGATGCTTTTAGGGTTGTAGTATCAAAACTCTTGGAATGTGCTCGTGATATGGTTAACAGGACACATAAGAATCGAAGGGTTCTTTCTATTCGAGTCGATCTTGTCGTAACAAGGGCTATTGAAGATGAAAGTGATGAAGAGGATAATAATTTTGAAGTAGATGATGATAGTGTTTTAGATGATAATGGTTTTGAAGTGGGTGATGAAAGTAGCGAAATCATTGAATACTCTGAAGATGAAGAAGATAACGGGTTGGTTCCTGCGGCAAAGTCATGTGTTGAGGGATTGAAGAAAGTTGAAAAGAAGGGAAAATGTGCTATTTGTTTGGAAAAATTTAAAGTTGGTGTTTTTATGCCATGTTTGCACATGTTTCATTCGAAATGTATTCGTGATTGGTTGGAGGTAGGCAATTCTTGCCCTTTGTGTAGGTTTAAGTTGCCAACTGAAACAAGTGAATGA | 711 | 0.3572 | MDEYHCDAYPNFSSIDYDTPNISSSPNDKYFNIELECTNMFVLNARKFETHSEIEYHTLSNVSNGELMQETIIISWLSQTDIPQDAFRVVVSKLLECARDMVNRTHKNRRVLSIRVDLVVTRAIEDESDEEDNNFEVDDDSVLDDNGFEVGDESSEIIEYSEDEEDNGLVPAAKSCVEGLKKVEKKGKCAICLEKFKVGVFMPCLHMFHSKCIRDWLEVGNSCPLCRFKLPTETSE* | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal5g2686 | 236 | PANTHER | F6A14.12 PROTEIN-RELATED | 49 | 232 | - | - | |
| Mal5g2686 | 236 | SUPERFAMILY | RING/U-box | 188 | 232 | - | - | |
| Mal5g2686 | 236 | Pfam | Zinc finger, C3HC4 type (RING finger) | 188 | 226 | - | - | |
| Mal5g2686 | 236 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 178 | 230 | IPR013083 | - | |
| Mal5g2686 | 236 | ProSiteProfiles | Zinc finger RING-type profile. | 189 | 227 | IPR001841 | - | |
| Mal5g2686 | 236 | SMART | ring_2 | 189 | 226 | IPR001841 | - | |
| Mal5g2686 | 236 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 49 | 232 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal5g2686 | Mal-Chr5 | 78529031 | 78529741 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal5g2686 | 143 | 233 | C3H Transcription Factor Family | AT5G01980 | 42.574 | 1.39e-15 | 73.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal5g2686 | - | K11982 | cam:101499491 | 249.21 |