Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2669 ATGGATGAATACCACTGTGATGCATACCCAAATTTTTCTTCCATTGATTATGACACACCAAATATTTCATCAAGCCCTAATGACAAGTATTGTAATATAGAACTTGAGTGCACAAATATGTTCGTTTTGAATGCTAGAAAGTTTGAAACTCATTCAGAAATAGAGTATCACACACTTTCAAATGTGTCAAACGGTGAACTGATGCAAGAAACTATCATTATATCATGGCTTTCTCAAACGAATATTCCTCAAGATGCTTTTAGGGTTGTAGTATCAAAACTCTTGGAATGTGCTCGTGATATGGTTAACAGGACACATAAGAATCGAAGGGTTCTTTCTATTCGAGTCGATCTTGTCGTAACAAGGGCTAGTGAAGATGAAAGTGATGAAGAGGATAATAATTTTGAAGTAGATGATGATAGTGATTTAGATGATAATGGTTTTGAAGTGGGTGATGAAAGTAGCGAAATCATTGAATACTCTGAAGATGAAGAAGATAACCGGTTGGTTCCTGCGGCAAAGTCATGTGTTGAGGGATTGAAGGAAGTTGAAAAGAACGGAAAATGTGCTATTTGTTTCGAAAAATTTGAAGTTGGTATTTTTATGCCATGTTTGCACATGTTTCATTCGAAATGTATTCGTCATTGGTTGGAGATAGGACATTCTTGCCCTTTGTGTAGGTTTAAATTGCCAACTAGAACAAGTGAATGA 711 0.3572 MDEYHCDAYPNFSSIDYDTPNISSSPNDKYCNIELECTNMFVLNARKFETHSEIEYHTLSNVSNGELMQETIIISWLSQTNIPQDAFRVVVSKLLECARDMVNRTHKNRRVLSIRVDLVVTRASEDESDEEDNNFEVDDDSDLDDNGFEVGDESSEIIEYSEDEEDNRLVPAAKSCVEGLKEVEKNGKCAICFEKFEVGIFMPCLHMFHSKCIRHWLEIGHSCPLCRFKLPTRTSE* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2669 236 MobiDBLite consensus disorder prediction 124 146 - -
Mal5g2669 236 SMART ring_2 189 226 IPR001841 -
Mal5g2669 236 ProSiteProfiles Zinc finger RING-type profile. 189 227 IPR001841 -
Mal5g2669 236 MobiDBLite consensus disorder prediction 123 146 - -
Mal5g2669 236 Pfam Zinc finger, C3HC4 type (RING finger) 188 226 - -
Mal5g2669 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 236 IPR013083 -
Mal5g2669 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 45 232 - -
Mal5g2669 236 SUPERFAMILY RING/U-box 188 233 - -
Mal5g2669 236 PANTHER F6A14.12 PROTEIN-RELATED 45 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2669 Mal-Chr5 78095816 78096526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2669 143 232 C3H Transcription Factor Family AT5G01980 38.235 1.82e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2669 - K11982 cam:101499491 247.284