Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2666 ATGAAGAGGTCAAGAGATGATGTTTACATGAGTTCACAACTCAAACGCCCTGTGCTGTCTTCTAGAGGAGAACCCTCGGGGCAACCCCAAGTGACGAGTGGTGGTCAGAAGTTAACCACAAATGATGCCTTATCATATCTTAAGGCGGTAAGAGAAATGTTTCAAAACGACAAGGAAAAGTATAATGAGTTTTTGGAAGTCATGAAGGATTTCAAGGCCCAAAGAGTTGATACAGCTGGAGTCATAGAAAGAGTGAAGGAGTTGTTTAAAGGGCATAAAGATTTAATTTTGGGATTTAACACCTTTTTGCCAAAGGGATATGCAATCACACTTTCGTCGGAAGATGAACAACCTCAACAGAAGAAGCCTGTTGAATTTGAAGAAGCTATACATTTTGTGGGCAAGATTAAGAATCGTTTTCAAGGCAATGATCGTGTGTATAAGACTTTTTTAGACATATTAAATATGTACCGAAAGGAAATCAAGCCTATCAACGTGGTTTACCAAGAGGTTTCTGCTCTCTTCCAAGACCATGCAGATCTTCTCGAGGAGTTTACTCATTTTCTTCCTGATACTTCAGGAGCAGCCGCTGCTCATTTTGCTTCTGCTCGTGATAGGAGCTCTGCAATGACAACAGGGAGGCAAATGCATGTTGACAAGAGAGAAAAGACAATAGCTTTGCATGCTGATCATGATCCCAGCGTTGGTCCTGATCCAGAACTTGACAGAAGTGTGATGAGGTCTGATAAGGAGCAGAGAAGACGTGATAGAGAGAAGGACCGTAGAGAAGAAAGAGTTAGGAAAGAACGGGAAAGGGATGATAGAGATTATGATAATGATGGTAATCGGGAGCGTTTATCCCTCAAGAAAAAATATGGTCATAGAGCTATAGACCTTGGTACTGAACCGTCGCATGATGCAGATGAAAAGCTTGACCTGCTCCCTACATCGTCCGCTTGTGAGGATAAAAGTTCTTTGAAAAGTATGTGTAGTCCAGTGCTTGCTTTCCTTGAAAAAGTCAAGGAGAAGTTAAAAAATACTGACGATTACCAGGAATTTTTGAAGTGCCTACACATCTACAGCAGGGAAATAATCACCCGACAAGAACTACTGGCATTGGTGGGTGATTTACTGGGAAAATATGCCGATATTATGGAGGGATTTGATGATTTTGTGACACAATGTGAAAACAATGGATTCCTTGCTGGTGTCATGAATAAAAAATCTTTGTGGAATGAAGGACATGGACAGAAACCAGTGAAGGTAGAGGACAAGGACAGAGATCGGGACAGGGATGATGGGTTGAAAGAGAGGGATCGTGAACTCCGAGAACGAGACAAATCCACTGGAATTGCCAAGGATGTTTCTATTCCTAAGGTGTCTCTAAGCAAGGACAAGTATGTAGGAAAGCCTATAAATGAACTGGACCTTTCTAACTGCGAACAATGTACTCCCAGTTACCGGCTTCTACCAAAAAATTACCCAATACCATTAGCTAGCCAGAGAACTGAACTCGGTTCCGAAGTATTGAATGATCACTGGGTTTCTGTAACGTCAGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAACCAGTATGAAGAGAGCTTGTTTAGATGCGAAGACGACAGGTTTGAACTTGATATGCTGTTAGAGTCTGTAAATGCAACAAATAAGAAAGTTGAAGAGATCTTAGAAAAAGTTAACGCTAATATAATTCAAGGAGACATCCCAATTCGTATTGAGGAGCACTTATCAGCTCTAAATCTTAGGTGCATTGAACGATTATATGGTGACCATGGGCTTGATGTGATGGATGTGTTGAAAAAGAATGCATCTCTAGCTTTGCCAGTGATATTAACCCGCTTGAAGCAAAAACAGGAGGAGTGGGCAAGATGCCGTGCAGATTTTAATAAAGTTTGGGCTGAAATATATGCGAAGAATTATCACAAATCACTTGATCACCGAAGCTTTTACTTTAAGCAGCAGGATACAAAAAGCTTGAGCACTAAAGCCTTACTGGGAGAGATCAAAGAAATTAGCGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCAATCGCTGCTGGAAATAGAAGGCCTATTCTTCCTAACTTGGAATTTGAGTATCCTGATCCAGAGATTCATGAAGAATTGTATCAGCTCATAAAATATTCATGTGGAGAAGTTTGTACAACCGAACAATTGGATAAAGTCATGAAGATTTGGACAACATTTTTAGAACCCATGCTTGGTGTTCCTTCTCGACTGCGCATTCCCGAAGACACAGAAGATGCTGTCAAGGCTAAGAATGATTCTGCAAAAACTGGCACTGCAATTATTGCCAAGGGTGATAGTAGTCCTGGTGTTGGTGCTACCGTAATGAATCCTAAGAGTTCAAACAGTAATAGAAATGGGGATAATAGTGTTCCATTTGAACAATCAAATTCTCGCAAAGAATGGCAAACAAATGGGGTTGGTGGGGTTAAAGAGGATGATTGTCTTGAATCAGACCGTTCTGCGCCTAAGACTGAAACTTTGGGAAGTAGTACACTGCAGGGTAAAGTTCATATAAGTGCATGCATTCCTGACGAAGTATCAAGAGTCAATAAGCAAGATCATTCCATTGAACACTTGGTGAATGCTAATGTCTCAATGTCCTCTGGAATGGAGCAAAGTAATGGAAGAACAAACATGAACAATGCATCAGGACTTGCTGCAATTCCGTCTAGACCTGGTTATGTTTCTAGTGAGGGAGGGCTTGATTTACCTTCATCAGAGGGTGCTGATTCTACTAGACCAGATACGTCCACTAATGGGGCCGCCACCGAAGACACCAAAGTTCACAGATGTCACAAAGAATCAGTTGGACTCTTCAAAAGTGAAAGAGAAGAGGGTGAATTATCTCCTAATGGAGACTTTGAAGAGGATAACTTTGCAGTTTATGCAAATGCTGGTCTGGAGGCAGCACATAAAGGAAAAGATTGTAATACCAGTCGACAATACCAAAATAGACGCGGGGAACAGACTTGTGGGGTTGCTGGAGGAGAAAATGACGATGAAAGTGATGGAAGTCCTCATAGATCATCGGACGACAGTGAAAATGCGTCTGAGAATGGTGATGTTTCTGGCACCGAGTCTGCTGATGGTGAGGAATGTTCTCGAGAAGAACATGAAGAGGATGGGGATCATGAACATGATAACAAGGCCGAGAGTGAAGGTGAAGCTGAAGGAATGGCAGATGCCAATGATGTTGAAGGAGATGGAGCCTCACTGCCATATTCAGAGCGCTTTCTTCTAACTGTAAAGCCTCTGGTAAAATATGTTCGCCCGGTGTTTCATGGGAAAGAAAAGAATGTTCGAATTTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACGATCGGCAAAGATTAACTCATCTTCTGCTGAAAAGAAATGGAGAGCTTCAAATGATACAAGTTCCACTGATCGATATGGAAGGTTCATGAATTCTCTTTACAGTTTACTGGATGGCTCTTCTGATAATTCAAAATTTGAGGATGACTGTAGAGCTATTATTGGAACTCAGTCATATGTCTTGTTCACGTTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCAGTGCGACTGATGAGATGGATAACAAACTTCTTCAACTATATGCATATGAACAATTAAGAAAACCTGGAAGCTTGATTGATATAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGAGGAGAACATATATCGTATTGAATGTTCACCTACCCGATTGTCGATTCAGTTGATGGACTATGGACATGATAAGCCTGAAGTGACTGCTGTGTCAATAGATCCTAATTTTTCAACCTATCTGCACAATGATTTCCTATCTGTTGTCCCCGACAGTAAGGAGAAGTCGGGAATTTTCTTGAAAAGGAATAAACTAAAACGTGCCGGGAGTGATGAATTTTCAAGCCAGGTTATGGATGGAGTACAAGTTACCAATGGTCTGGAGTGTAAGATTGCTTGCAATTCATCCAAAGTTTCATACGTTTTAGATACCGAAGACTCTTTAATTCGAACAAAAAGGAAAAGGAGAACTTTGGATCAGAACAATTCATATCGTGAACAGACAATGTCTTCAAACACTTGTTCAAGCAGAGCACAGCGGTTCTGCAAATTATTTTCCATCAAATGA 4233 0.4073 MKRSRDDVYMSSQLKRPVLSSRGEPSGQPQVTSGGQKLTTNDALSYLKAVREMFQNDKEKYNEFLEVMKDFKAQRVDTAGVIERVKELFKGHKDLILGFNTFLPKGYAITLSSEDEQPQQKKPVEFEEAIHFVGKIKNRFQGNDRVYKTFLDILNMYRKEIKPINVVYQEVSALFQDHADLLEEFTHFLPDTSGAAAAHFASARDRSSAMTTGRQMHVDKREKTIALHADHDPSVGPDPELDRSVMRSDKEQRRRDREKDRREERVRKERERDDRDYDNDGNRERLSLKKKYGHRAIDLGTEPSHDADEKLDLLPTSSACEDKSSLKSMCSPVLAFLEKVKEKLKNTDDYQEFLKCLHIYSREIITRQELLALVGDLLGKYADIMEGFDDFVTQCENNGFLAGVMNKKSLWNEGHGQKPVKVEDKDRDRDRDDGLKERDRELRERDKSTGIAKDVSIPKVSLSKDKYVGKPINELDLSNCEQCTPSYRLLPKNYPIPLASQRTELGSEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATNKKVEEILEKVNANIIQGDIPIRIEEHLSALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLGEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFEYPDPEIHEELYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSRLRIPEDTEDAVKAKNDSAKTGTAIIAKGDSSPGVGATVMNPKSSNSNRNGDNSVPFEQSNSRKEWQTNGVGGVKEDDCLESDRSAPKTETLGSSTLQGKVHISACIPDEVSRVNKQDHSIEHLVNANVSMSSGMEQSNGRTNMNNASGLAAIPSRPGYVSSEGGLDLPSSEGADSTRPDTSTNGAATEDTKVHRCHKESVGLFKSEREEGELSPNGDFEEDNFAVYANAGLEAAHKGKDCNTSRQYQNRRGEQTCGVAGGENDDESDGSPHRSSDDSENASENGDVSGTESADGEECSREEHEEDGDHEHDNKAESEGEAEGMADANDVEGDGASLPYSERFLLTVKPLVKYVRPVFHGKEKNVRIFYGNDSFYVLFRLHQTLYERIRSAKINSSSAEKKWRASNDTSSTDRYGRFMNSLYSLLDGSSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASATDEMDNKLLQLYAYEQLRKPGSLIDIVYHENARVLLHEENIYRIECSPTRLSIQLMDYGHDKPEVTAVSIDPNFSTYLHNDFLSVVPDSKEKSGIFLKRNKLKRAGSDEFSSQVMDGVQVTNGLECKIACNSSKVSYVLDTEDSLIRTKRKRRTLDQNNSYREQTMSSNTCSSRAQRFCKLFSIK* 1411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2666 1410 MobiDBLite consensus disorder prediction 1049 1077 - -
Mal5g2666 1410 MobiDBLite consensus disorder prediction 890 976 - -
Mal5g2666 1410 Gene3D Paired amphipathic helix 42 104 IPR036600 GO:0006355
Mal5g2666 1410 MobiDBLite consensus disorder prediction 417 447 - -
Mal5g2666 1410 MobiDBLite consensus disorder prediction 1 37 - -
Mal5g2666 1410 MobiDBLite consensus disorder prediction 14 37 - -
Mal5g2666 1410 SUPERFAMILY PAH2 domain 119 191 IPR036600 GO:0006355
Mal5g2666 1410 Pfam Sin3 family co-repressor 481 571 IPR013194 -
Mal5g2666 1410 ProSiteProfiles PAH domain profile. 36 106 IPR003822 GO:0006355
Mal5g2666 1410 MobiDBLite consensus disorder prediction 946 969 - -
Mal5g2666 1410 MobiDBLite consensus disorder prediction 890 906 - -
Mal5g2666 1410 Pfam Paired amphipathic helix repeat 146 189 IPR003822 GO:0006355
Mal5g2666 1410 Pfam Paired amphipathic helix repeat 348 391 IPR003822 GO:0006355
Mal5g2666 1410 Pfam Paired amphipathic helix repeat 59 103 IPR003822 GO:0006355
Mal5g2666 1410 Gene3D Paired amphipathic helix 120 193 IPR036600 GO:0006355
Mal5g2666 1410 ProSiteProfiles PAH domain profile. 122 192 IPR003822 GO:0006355
Mal5g2666 1410 MobiDBLite consensus disorder prediction 226 285 - -
Mal5g2666 1410 MobiDBLite consensus disorder prediction 781 851 - -
Mal5g2666 1410 PANTHER SIN3B-RELATED 1 1383 IPR039774 GO:0003714
Mal5g2666 1410 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1383 - -
Mal5g2666 1410 SMART hdac_interact2seq4b 479 579 IPR013194 -
Mal5g2666 1410 MobiDBLite consensus disorder prediction 415 447 - -
Mal5g2666 1410 ProSiteProfiles PAH domain profile. 326 395 IPR003822 GO:0006355
Mal5g2666 1410 SUPERFAMILY PAH2 domain 35 105 IPR036600 GO:0006355
Mal5g2666 1410 MobiDBLite consensus disorder prediction 993 1089 - -
Mal5g2666 1410 Coils Coil 548 572 - -
Mal5g2666 1410 MobiDBLite consensus disorder prediction 1021 1036 - -
Mal5g2666 1410 MobiDBLite consensus disorder prediction 930 945 - -
Mal5g2666 1410 MobiDBLite consensus disorder prediction 793 824 - -
Mal5g2666 1410 Pfam C-terminal domain of Sin3a protein 1124 1370 IPR031693 -
Mal5g2666 1410 SUPERFAMILY PAH2 domain 331 395 IPR036600 GO:0006355
Mal5g2666 1410 Gene3D Paired amphipathic helix 325 397 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2666 Mal-Chr5 78011984 78028263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2666 28 118 WRKY Transcription Factor Family AT4G12020 56.383 2.06e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal5g2666 Sin3a_C 4.2e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2666 K11644 - gmx:100781798 2036.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1782 6 34517508 34530317 Mal5g2666 5 78011984 78028263 PCT