Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2654 ATGGATCCAGGAGCGATGATGAACGAGGGTTCATTTCCGAATGGGAGTGGGAATACGACGCCGTTTAGTTTAGCGGAGATCTGGCAGTTTCCACCTGCGATTAATGGCGGTGGAGGTGGATTGGGACTAAGAAGGCCGCAGTTTGGGAACGGTTTAGGACAGTTTGGTGAATTTGGACCCGGTTTGAACCGGGATGGTAATGGACCCGAGTCAAGAGTTGTTTTGAACCATCCTGGTGGTGGTAAGAAGAGGCGTGACTCTGAAGATGATTCTGCTAAGTGTGTTTCCACCAGTAATGGCGGTGTCAGTGCCATGAATGATAGTGATGGAAAACGGACTAAAGCATCGGGTAACAGGAATGACGGTGGTGATGGTAAAGTTGAAGGAGAAGCCAGTTCAGGAAAGCATGCGGAGCAAAGCAGTAAGCCACCTCCTTCTGACCCTCCTAAGCAAGATTACATCCACGTTCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAACGTGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTAGTTCCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTGCTTGATGAGATAATTAATTATATTCAATCACTTCAGCGCCAAGTGGAGTTTTTATCGATGAAACTTGAAGCAGTTAATTCAAGACTGAATACCGGCATTGAAGCCTTTCCTCCAAAAGATTTTGGTCAACAATCATTTGATCTCGCTGGTATGCCGTTTGTTTCACAAGCAACAAGAGAGCCAAGCAGAGGTTCTTCACCAGAATGGTTACATATGCAGGTAGGTGGTGGTTTCGAAAGAACGACGTAG 852 0.4577 MDPGAMMNEGSFPNGSGNTTPFSLAEIWQFPPAINGGGGGLGLRRPQFGNGLGQFGEFGPGLNRDGNGPESRVVLNHPGGGKKRRDSEDDSAKCVSTSNGGVSAMNDSDGKRTKASGNRNDGGDGKVEGEASSGKHAEQSSKPPPSDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEAFPPKDFGQQSFDLAGMPFVSQATREPSRGSSPEWLHMQVGGGFERTT* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2654 283 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 283 IPR024097 GO:0006355
Mal5g2654 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 229 IPR036638 GO:0046983
Mal5g2654 283 MobiDBLite consensus disorder prediction 77 92 - -
Mal5g2654 283 SMART finulus 168 218 IPR011598 GO:0046983
Mal5g2654 283 MobiDBLite consensus disorder prediction 1 152 - -
Mal5g2654 283 PANTHER BNAC05G07950D PROTEIN 1 283 - -
Mal5g2654 283 CDD bHLH_AtBPE_like 153 237 - -
Mal5g2654 283 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Mal5g2654 283 MobiDBLite consensus disorder prediction 258 283 - -
Mal5g2654 283 MobiDBLite consensus disorder prediction 11 25 - -
Mal5g2654 283 MobiDBLite consensus disorder prediction 93 111 - -
Mal5g2654 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Mal5g2654 283 Coils Coil 209 229 - -
Mal5g2654 283 Gene3D - 159 235 IPR036638 GO:0046983
Mal5g2654 283 MobiDBLite consensus disorder prediction 112 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2654 Mal-Chr5 77385657 77388746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2654 1 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 56.855 9.45e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal5g2654 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2654 - - gmx:100784478 389.808