Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2578 ATGGCAAAATCACTTGACATTTTTCTTTTTTTGTTTTGTTTGGCAATTTTCATTCCTATATTGAATGCCAATAAATTAGAGAATAAGGAGTATTGGAAAGAATCATCACCTGAATTTGATTCATATTGGCAAGAAAGGGCTAAGGTTGCAAAACAAGTTAACCAAGCTGCTTATTTTCCTGATCCTTATGCAGTCTCTGGAAACTTTACTGCTTCTATTTCAGAAATCATAGCCGGAAAGGACACAAGAAGGAACTTGGGAGGACTTAACGATGGAAAATGCAAGGCCACAAACCCCATTGACAGATGCTGGAGGTGTGACCCAAATTGGGCTGACAACCGTCAAAAGCTAGCAGATTGTGTCCAAGGATTCGGAAGAAACACCATCGGAGGTAAAGGCGGTCCAATCTACGTTGTCACCGATCCTTCTGACGACGAATTGTTGGAACCAAAACCCGGAACTCTCCGTTATGCTGTTACGCGTAACGGTTCCCTTTGGATCACATTCGCTCGCGGCATGGTCATCACACTCCAACAAGAACTTATCATGTCTAGTGACAAAACCATTGACGGTAGAGGTGCTGAAATTTACATTGTCAACGGTGCCGGTATCACCATTCAATTTGTTAAGAACATTATCATCCATGGAATTAAAATTTACAACATTGTAGTCCGTAATGGCGGTATGATTAGAGATTCTGAGACCCATTATGGATTTAGAACTAGGAGTGATGGTGATGGTATTTCCATCTTTGGTGCTAGTAATGTTTGGATTGATCATGTTTCCATGAAAAATTGTACTGATGGTTTGATTGATGTTATCATGGGTTCCACTGCTATTACCATCTCTAACAGTCACTTCACTGACCACAATGAGGTGATGCTTTTTGGTGCTAGTAACGACTACTCCGAAGATAAAATCATGCAAATCACATTGGCATTCAACCACTTCGGAAAGAGATTAGTCCAAAGAATGCCAAGGGCAAGATATGGTTTCATCCATTGTGTTAACAATGACTACACTCATTGGGAAATGTATGCGATTGGTGGTAGCCAGAACCCTACCATTATTAGTGAGGGTAACCGATTTATTGGCCCTTTTAACAAAATGGAAGGCAACGACCTAATCAATTCAAAAGAAGTAACAAAGAGGGAATACACAGAGGAGAGCGAATGGAAAGACTGGCAATGGAGATCAATCAACGACGAATTTTTGAACGGAGCATACTTCATACAATCTGGACCAGAGCTAAAGGACAGACCATTTTCAAGGAAAGACATGATTAAAGCTAAACCAGGAAGTTATGTCGGAAGACTTACTCGGTATTCTGGAAATATACGATGCCATGTTGGTCAACCATGTTAG 1365 0.4059 MAKSLDIFLFLFCLAIFIPILNANKLENKEYWKESSPEFDSYWQERAKVAKQVNQAAYFPDPYAVSGNFTASISEIIAGKDTRRNLGGLNDGKCKATNPIDRCWRCDPNWADNRQKLADCVQGFGRNTIGGKGGPIYVVTDPSDDELLEPKPGTLRYAVTRNGSLWITFARGMVITLQQELIMSSDKTIDGRGAEIYIVNGAGITIQFVKNIIIHGIKIYNIVVRNGGMIRDSETHYGFRTRSDGDGISIFGASNVWIDHVSMKNCTDGLIDVIMGSTAITISNSHFTDHNEVMLFGASNDYSEDKIMQITLAFNHFGKRLVQRMPRARYGFIHCVNNDYTHWEMYAIGGSQNPTIISEGNRFIGPFNKMEGNDLINSKEVTKREYTEESEWKDWQWRSINDEFLNGAYFIQSGPELKDRPFSRKDMIKAKPGSYVGRLTRYSGNIRCHVGQPC* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2578 454 Pfam Pectate lyase 182 363 IPR002022 -
Mal5g2578 454 SMART amb_all 172 369 IPR002022 -
Mal5g2578 454 PANTHER PECTATE LYASE 18-RELATED 4 454 IPR045032 GO:0030570
Mal5g2578 454 PRINTS Pollen allergen Amb family signature 425 448 IPR018082 -
Mal5g2578 454 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Mal5g2578 454 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Mal5g2578 454 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Mal5g2578 454 PRINTS Pollen allergen Amb family signature 395 419 IPR018082 -
Mal5g2578 454 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Mal5g2578 454 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Mal5g2578 454 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Mal5g2578 454 Gene3D - 97 447 IPR012334 -
Mal5g2578 454 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
Mal5g2578 454 PANTHER PECTATE LYASE 4 454 - -
Mal5g2578 454 SUPERFAMILY Pectin lyase-like 98 444 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2578 Mal-Chr5 75353028 75355543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2578 7 454 Polysaccharide Lyase AT1G14420 56.652 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2578 K01728 - gmx:100798579 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2578 5 75353028 75355543 Mal5g2578 5 75353028 75355543 ECH