Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2560 ATGTCTCATTTACAGTTACAGCTACACTCACAACCACCATCACTCTCATCATCTTTTTCATCCCTCAAACTTTTCACTTACAACAACTCTTTCTCTTCCAAAAACTCTCTACCTTTCAAATTCAAACCCCTCACTGTCAGATGCAGTCACTCTGACGTCTTCAACCCTTCCCCACCACACCCCCCTCCTCCCACTACACCCCCCAACAACCCTTCAGTTGGAGCTTTGCCACCTAGGGTTTATGTAGGTCATTCCATTTACAAAGGGAAGGCTGCTCTTACTATCACTCCTAGACCACCAGAGTTCGCGCCATTGGATTCAGGGGCATATAAGATATCTAGGGATGGTTGTGTGCTGCTTCAGTTTGCACCGTCTGTTGGTCCGCGCCAATATGATTGGAATAGAAAACAGGTGTTCTCGTTGTCTGTAAATGAAATGGGAAGTGTGATTAGCCTTGGTCCAAGGGAGTCTTGTGAATTTTTCCACGATCCTCTCAAGGGAAAAAGTGATGAAGGCAAAGTCAGAAAGGTTTTGAAGGTTGAGCCTTTTCTGGATGGTTCTGGTTTCTTCTTTAACCTCAGTGTTCAAAACAAAATTGTGAATGTGGATGAAAGCATCAATCTCCCTGTATCAAAAGCAGAGTTGTCAGTTTTACGCTCAATTTTCAAGTATATCATACCATACCTTCTAGGTTGGCATACCTTTGTAAACTCCATAAATCCGGAGTATTCCGCAGTGGCAAACCATGTGGCGAACAATGCCAATCCAAGATACGGTGGAGACTATGAATGGAACAGATAG 801 0.4382 MSHLQLQLHSQPPSLSSSFSSLKLFTYNNSFSSKNSLPFKFKPLTVRCSHSDVFNPSPPHPPPPTTPPNNPSVGALPPRVYVGHSIYKGKAALTITPRPPEFAPLDSGAYKISRDGCVLLQFAPSVGPRQYDWNRKQVFSLSVNEMGSVISLGPRESCEFFHDPLKGKSDEGKVRKVLKVEPFLDGSGFFFNLSVQNKIVNVDESINLPVSKAELSVLRSIFKYIIPYLLGWHTFVNSINPEYSAVANHVANNANPRYGGDYEWNR* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2560 266 Gene3D Transcriptional Coactivator Pc4; Chain A 72 245 IPR009044 GO:0003677|GO:0006355
Mal5g2560 266 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 14 266 IPR013742 GO:0003697|GO:0006355|GO:0006952
Mal5g2560 266 MobiDBLite consensus disorder prediction 55 74 - -
Mal5g2560 266 MobiDBLite consensus disorder prediction 52 75 - -
Mal5g2560 266 Pfam Whirly transcription factor 86 221 IPR013742 GO:0003697|GO:0006355|GO:0006952
Mal5g2560 266 SUPERFAMILY ssDNA-binding transcriptional regulator domain 78 266 IPR009044 GO:0003677|GO:0006355
Mal5g2560 266 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 14 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2560 Mal-Chr5 73762264 73766652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2560 75 266 Whirly Transcription Factor Family AT1G14410 71.354 1.81e-102 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Mal5g2560 Whirly 5.1e-60 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2560 - - gmx:100789252 343.584