Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2553 ATGAATTCTTGCCAACAAGTGATTCGCATGTTCCACACTCCATTTCGTTTTCTCACATTTCCATGCACAAAGCCACCTCAACTAAACATTCACCTCTTACTTTCCCTTCCTGCACCAACCATTCTCTGCTCATCACTCAATGATGATTCCTTTTCCATCCCAAAATCATCCCAGTTTGGTTATAGTCCTCCAGAGGATCTCTTTGGGCTGGAGGTGGAATTCAAGCCAAGGAAAGCTAACTCTCATACAAGAGAACCAAGGTCATGGTTTGGTCCAAATGGACAATATATCAGAGAGCTACCTTGTCCAAGTTGCCGAGGAAGGGGTTATACTCCTTGTACAGAATGTGGAATTGAAAGATCTAGGTCAGACTGTCCAAAATGTAATGGAAAGGGTTCACTGACTTGCCACCAGTGCTCTGGAGATTGTGTTATATGGGAAGAGTCGATTGATGAACGACCATGGGAGAGAGCTCAATCAATATCTCCACTCAAAGTGAAGGATGATGATGAAGTTGACAAATTGGACATAAAGCTAGATGCGAAGAAAAAATCCAAGCGTGTTTACCAGTCACCATCTCCTGAAGTTGGATTAAAGATTAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAAACGAATGAAGATCATCCACCAGGATCCCACGCTTCAGGCACAGCGAGTGACTGCTATTAAGAAAGCCAAGAGGACTGTTTCAGCAAGAAATCATGCTTCCGAAACTATGAAGGAGTTCTTTAGTGATCCAATAAACCGTCAAAAAAGGAGCATGGCCATGCAAGGAGTGAAATTCTATTGTCGAAACTGTGGACGTGAAGGACATCGGAGACACTACTGTCCAGAACTGAAGGATGGTTTGATTGATCGCCGATTCACATGTAGTCTATGTGACGAAAAAGGCCACAACAGAAGAACATGCGATAAGCTAAGGATAAGCCATAGTGATGGGAGAGTTATAAAACATCATCGATGTAAAATATGTCGACAGTATGGCCATAACCGAAGGACATGCCCTCAAGTTGTTTCAAATAAAAGAATGGATATGACATCTCAGAGAGTATACAAATGTCGATTATGCCAGAAAGAGGGACACAATATTAGGACATGTCCTAGTAGAATAGTTGGTACTGAACATTCTCAAGAATAA 1176 0.4175 MNSCQQVIRMFHTPFRFLTFPCTKPPQLNIHLLLSLPAPTILCSSLNDDSFSIPKSSQFGYSPPEDLFGLEVEFKPRKANSHTREPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPKCNGKGSLTCHQCSGDCVIWEESIDERPWERAQSISPLKVKDDDEVDKLDIKLDAKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSKRMKIIHQDPTLQAQRVTAIKKAKRTVSARNHASETMKEFFSDPINRQKRSMAMQGVKFYCRNCGREGHRRHYCPELKDGLIDRRFTCSLCDEKGHNRRTCDKLRISHSDGRVIKHHRCKICRQYGHNRRTCPQVVSNKRMDMTSQRVYKCRLCQKEGHNIRTCPSRIVGTEHSQE* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2553 391 SMART c2hcfinal6 275 291 IPR001878 GO:0003676|GO:0008270
Mal5g2553 391 SMART c2hcfinal6 302 318 IPR001878 GO:0003676|GO:0008270
Mal5g2553 391 SMART c2hcfinal6 333 349 IPR001878 GO:0003676|GO:0008270
Mal5g2553 391 SMART c2hcfinal6 365 381 IPR001878 GO:0003676|GO:0008270
Mal5g2553 391 SUPERFAMILY Retrovirus zinc finger-like domains 273 319 IPR036875 GO:0003676|GO:0008270
Mal5g2553 391 Pfam Zinc knuckle 364 380 IPR025829 -
Mal5g2553 391 Gene3D - 329 387 - -
Mal5g2553 391 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 44 383 - -
Mal5g2553 391 ProSiteProfiles Zinc finger CCHC-type profile. 276 291 IPR001878 GO:0003676|GO:0008270
Mal5g2553 391 SUPERFAMILY Retrovirus zinc finger-like domains 327 382 IPR036875 GO:0003676|GO:0008270
Mal5g2553 391 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 44 383 - -
Mal5g2553 391 Gene3D - 271 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2553 Mal-Chr5 73530827 73535655 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2553 6 389 C2H2 Transcription Factor Family AT5G20220 58.228 1.10e-156 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2553 - - cam:101493936 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2553 5 73530827 73535655 Mal5g2553 5 73530827 73535655 ECH