Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2549 ATGTCAAGACAAACAGAGAGCAAGGGAGTTTCGCAAGACAAACAGAGAGCAAGGGAGAGGGAGGTTGCTTCAGAGAAAGCAGTGAAGAGGAAAGGAACATTAAACAAAGCAATGGAGCAGCAACAAGAAGAACATATGACAGCAAGAAGTTACAGAAGATTTCTCAACAGGGGTTTGGCTCGTAGAAGAAATATTGAAACTAATCGAAGACATTTTTATGACAATCTTCCAAGAATCAGAATTGAAGAAGGAAGGGTGGAGGAAGCATGCTCTATATGTTTGGTGGATCATTCGGCCGGGTCAACAGCAATTCAGTTTCCATGTTCACATATCTATCATGAAGACTGTATTATGATATGGCTTGAAAGATCAAACACATGTCATATTTGTCGTCATAATGTTTTTGATGTTTCCTCATGA 420 0.3952 MSRQTESKGVSQDKQRAREREVASEKAVKRKGTLNKAMEQQQEEHMTARSYRRFLNRGLARRRNIETNRRHFYDNLPRIRIEEGRVEEACSICLVDHSAGSTAIQFPCSHIYHEDCIMIWLERSNTCHICRHNVFDVSS* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2549 139 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF181 16 133 - -
Mal5g2549 139 MobiDBLite consensus disorder prediction 1 47 - -
Mal5g2549 139 ProSiteProfiles Zinc finger RING-type profile. 90 131 IPR001841 -
Mal5g2549 139 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 16 133 - -
Mal5g2549 139 Pfam Ring finger domain 89 131 IPR001841 -
Mal5g2549 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 139 IPR013083 -
Mal5g2549 139 SMART ring_2 90 130 IPR001841 -
Mal5g2549 139 MobiDBLite consensus disorder prediction 9 47 - -
Mal5g2549 139 SUPERFAMILY RING/U-box 72 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2549 Mal-Chr5 73373170 73374111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2549 90 131 C3H Transcription Factor Family AT5G54990 50.000 2.52e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2549 - K11982 pvu:PHAVU_007G098000g 75.0997