Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2548 ATGTCTCATTTACAGTTACAGCTACACTCACAACCACCATCACTCTCATCATCTTTTTCATCCCTCAAACTTTTCACTTACAACAACTCTTTCTCCTCTTCCAAAAACTCTCTACCTTTCAAATTCAAACCCCTCACTGTCAGATGCAGTCACTCTGACGTCTTCAACCCTTCCCCACCACACCCCCCTCCTCCCACTACACCCCCCAACAACCCTTCAGTTGGAGCTTTGCCACCTAGGGTTTATGTAGGTCATTCCATTTACAAAGGGAAGGCTGCTCTTACTATCACTCCTAGACCACCAGAGTTCGCGCCATTGGATTCAGGGGCATATAAGATATCTATGGATGGTTATGTGCGGCTTCAGTTTGCACCCTCTGTTGGTCCGCGCCAATATGATTGGAATAGAAAACAGGTGTTCTCGTTATCTGTGGATGAAATGGGAAGTGTGATTAGCCTTGGTCCAAGGGAGTCTTGTGAATTTATCCACGATCTTCTCATGGGAAAATGTGGTGAAGGCAAAATCAGAAAGGTTTTGAAGGTTGAGCCTTTTCTGGATGGTTCTGGTTTCTTCTTTAACCTCAGTGTTCAAAACAAAATTGTGAATGTGGATGAAAGCATCAATCTCCCTGTATCAAAAGCAGAGTTTTCAGTTTTACGCTCAATTTTCAAGTATATCATACCATACCTTCTAGGTTGGCATACCTTTGTAAACTCCATAAATCCGGAGTATTCCGCAGTGGCAAACCATGTGGCGAACAAATGCTAA 768 0.4349 MSHLQLQLHSQPPSLSSSFSSLKLFTYNNSFSSSKNSLPFKFKPLTVRCSHSDVFNPSPPHPPPPTTPPNNPSVGALPPRVYVGHSIYKGKAALTITPRPPEFAPLDSGAYKISMDGYVRLQFAPSVGPRQYDWNRKQVFSLSVDEMGSVISLGPRESCEFIHDLLMGKCGEGKIRKVLKVEPFLDGSGFFFNLSVQNKIVNVDESINLPVSKAEFSVLRSIFKYIIPYLLGWHTFVNSINPEYSAVANHVANKC* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2548 255 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 34 252 - -
Mal5g2548 255 MobiDBLite consensus disorder prediction 53 76 - -
Mal5g2548 255 Pfam Whirly transcription factor 87 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
Mal5g2548 255 SUPERFAMILY ssDNA-binding transcriptional regulator domain 79 249 IPR009044 GO:0003677|GO:0006355
Mal5g2548 255 Gene3D Transcriptional Coactivator Pc4; Chain A 74 251 IPR009044 GO:0003677|GO:0006355
Mal5g2548 255 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 34 252 IPR013742 GO:0003697|GO:0006355|GO:0006952
Mal5g2548 255 MobiDBLite consensus disorder prediction 56 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2548 Mal-Chr5 73364530 73368898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2548 76 252 Whirly Transcription Factor Family AT1G14410 67.232 1.97e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Mal5g2548 Whirly 3.1e-54 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2548 - - gmx:100789252 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2548 5 73364530 73368898 Mal5g2548 5 73364530 73368898 ECH