Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2538 ATGTCCGGCGCCAAGAAGAAACAACCTCCTCTCAAGAAAACCAAAACTCATCACTCCACTCCCTCCGAAAACCTATTATTTAAATACTTTCAACCACTCAACAACCCTACTCCTCCTAAAAGCCCTAATGCTGAATCTCCAACCAAGTTTCCTTGCAAAACATCAACTTCTTCCACTTCTTCTTCTCCATCTTCTTCATCCTCTTCCACCAATGTTGCTGAACTGAAGAAACGGATTTCACTTGCAGTTGCATGGTGGAAGAAGGGTGAACCAGTGCCGTTTCTGTTCTTGTCGTTAGCATTCGACATGATCAAGGCAGAGAGTGGGAGGAATGCGATGTCGGATATTGGTTGTAACGTTCTGAGGACTGTGATGCATACTACTCCTGATGATTTATCATCAGTGGTGTATCTATTTTCAAATAGGATTGCTCCACCACATCAAGGTTTAGAAATGGGAATTGGTAAAGCTGCTGTTATAAAGGCACTTGCTGAAGCATGTGGAAGGACTGAGAAGGATATTAAGGAGCACTACAAGAAATTAGGTGACTTGGGGTTAGTTGCTCAAGCTAGCCGTTTGTCTCAGATGCTGCAGAGGCCTGATGCATTGACTATTACCAAGGTTTTCAATACCGTTCACCTTATTGCTAAGGAATCTGGAAAGGACAGCCAAAAGAAGAAAAAGAATCATATACAGTCGCTTCTTCTTGCTTCGACTCATTGTGAACCTTTATATCTAATCCGCTTACTACTGGTGCAGTTGCGGATTGGATATGCCGAGCAAACTCTCTTATCTGCATTGGGCCAAGCTGCAGTGTACACTGAAGAACATTCTAAACCACCTCCTGGAATTCAGTCTCCTTTAGAAGAGGCTACGAAGATTGTGAAACAGGCCTATTCTGTTCTCCCTGATTATGACAAAATAGTATCTGCACTGCTTACTGATGGTGTATGGCTACTTCCGAAGACTTGTAATTTTACTGTTGGTATTCCGGTTGAGCCTAAGCTGTCAGAAAAAATCACAGGTGTATCTGAAGCTCTGAATAAGTTACAGGATAAAAAGTTGATTTGTGAATACAAATACGATGGAGAGCGTGCTCAGATACATTACATGGAGAATGGCTCAGTAGAGATTTATAGTAGAAACGCAGAACGTAACACTGCGAAGTTTCAAGATGTCGTCGCTGCAGTTTCAAGGTTAAAGAAAAAAAATGTGTCATCGTTTGTTCTAGATTGTGAAATTGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCTATGCAGGTGCTTAGTACTCGGGCAAGAAAAGATGTAGCTGTGAGTAACATAAAGGTTGATGCCTGCGTATTTCCTTTTGATTTGTTGTATCTTAATGGCCAAGAACTTTTTCAGAAAAACCTGAAAATCCGTAGAGAGCATCTCTATGCCTCATTTAAGGAGGAATCAGGATTTCTTCAGTTTGCAACGTCGTTAATATCAAATGATGCTAAGGAAATACAGAAGTTTCTTGACAAATCTGTTGATGCAAGCTGTGAGGGATTAATTTTTAAAACATTAGACAAAGATTCTACATATCAACCTTCCCAACGGAACTGGCTAAAACTGAAGAAAGATTATATGAAGACGGGGGACACACTAGATTTGGTACCGATTGGTGCTTTCCATGGTCAAGGGAAACGAGCAGGAGTCTACGGTTCCTTTCTCCTTGCTTGCTATGACGTTGATAAAGAAGAATTTCAAACTATTTCTAAGACAGGAACTGGATTCAGTGATGAAACCAAAGAATTACTCCTTTCATTTCAGGCGTACTATAAACATGCAGAAAAAGATAAACCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAAAGCTTCAGACCTGACCATTAGCCCTGGTTACCAAGCTGCAGTGGGAAAAGTTCATTCGGTTAAGGGCATATCTCTTCGAATGCCGCGTCTTATTCGAGTTCGGCTTGACAAAACTCCTCAACAGGCCACGTCATCTGAGCGGATTGCTGAAATGTATAATGCTCAAAAACACAATCACCCGGACAAATCCAAGATGAAAAATTGA 2079 0.4132 MSGAKKKQPPLKKTKTHHSTPSENLLFKYFQPLNNPTPPKSPNAESPTKFPCKTSTSSTSSSPSSSSSSTNVAELKKRISLAVAWWKKGEPVPFLFLSLAFDMIKAESGRNAMSDIGCNVLRTVMHTTPDDLSSVVYLFSNRIAPPHQGLEMGIGKAAVIKALAEACGRTEKDIKEHYKKLGDLGLVAQASRLSQMLQRPDALTITKVFNTVHLIAKESGKDSQKKKKNHIQSLLLASTHCEPLYLIRLLLVQLRIGYAEQTLLSALGQAAVYTEEHSKPPPGIQSPLEEATKIVKQAYSVLPDYDKIVSALLTDGVWLLPKTCNFTVGIPVEPKLSEKITGVSEALNKLQDKKLICEYKYDGERAQIHYMENGSVEIYSRNAERNTAKFQDVVAAVSRLKKKNVSSFVLDCEIVAYDRAKQRILPMQVLSTRARKDVAVSNIKVDACVFPFDLLYLNGQELFQKNLKIRREHLYASFKEESGFLQFATSLISNDAKEIQKFLDKSVDASCEGLIFKTLDKDSTYQPSQRNWLKLKKDYMKTGDTLDLVPIGAFHGQGKRAGVYGSFLLACYDVDKEEFQTISKTGTGFSDETKELLLSFQAYYKHAEKDKPDVWFEASEVWEVKASDLTISPGYQAAVGKVHSVKGISLRMPRLIRVRLDKTPQQATSSERIAEMYNAQKHNHPDKSKMKN* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2538 692 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 358 366 IPR016059 GO:0003909
Mal5g2538 692 SUPERFAMILY Nucleic acid-binding proteins 543 680 IPR012340 -
Mal5g2538 692 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 80 324 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mal5g2538 692 Gene3D DNA ligase/mRNA capping enzyme 363 488 - -
Mal5g2538 692 CDD OBF_DNA_ligase_I 543 679 - -
Mal5g2538 692 Pfam DNA ligase N terminus 93 267 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mal5g2538 692 Pfam ATP dependent DNA ligase C terminal region 560 662 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mal5g2538 692 Gene3D - 72 336 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mal5g2538 692 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 152 677 IPR000977 GO:0003910|GO:0005524|GO:0071897
Mal5g2538 692 Gene3D - 344 540 - -
Mal5g2538 692 ProSiteProfiles ATP-dependent DNA ligase family profile. 440 573 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mal5g2538 692 PANTHER DNA LIGASE 1 22 688 - -
Mal5g2538 692 CDD Adenylation_DNA_ligase_I_Euk 323 539 - -
Mal5g2538 692 MobiDBLite consensus disorder prediction 47 71 - -
Mal5g2538 692 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 22 688 - -
Mal5g2538 692 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 326 540 - -
Mal5g2538 692 MobiDBLite consensus disorder prediction 1 71 - -
Mal5g2538 692 Pfam ATP dependent DNA ligase domain 334 536 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mal5g2538 692 Gene3D - 541 691 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2538 Mal-Chr5 72678791 72685159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2538 83 685 Core DNA Replication Machinery Family AT1G08130 63.312 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2538 K10747 - gmx:100783155 849.736