Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2535 ATGGCGTTCTTTCCAGCAAATTTCATGCTACAATCTTCTCATCAAGATGACCATCATCAACCTCCACCTTCTCTCAACTCAATTATAACCTCATGTGCACCTCAAGATTACCATGGAGGAGTATCCTTTTTAGGAAAGAGATCCATGTCATTTTCAGGGATAGAACTTGGAGAAGAAGCTAATGTCGAGGAAGAATTATCCGATGATGGATCGCAGTTAGGGGAAAAGAAGAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAGTTAGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTTGCAAGGGCACTTGGATTGCAGCCAAGACAGATTGCTATTTGGTTCCAAAACAGAAGGGCTAGGTGGAAGACAAAACAGTTGGAGAAAGACTATGATGTTCTTAAAAGACAATATGATAATATTAAGGCTGATAATGATGCACTTCAGGCTCAGAACCAAAAACTTCAGACAGAGATTTTGGCACTGAAAAATAGAGAACCAACTGAATCAATCAATCTTAATAAAGAAACAGAAGGATCAAGCAGTAACAGAAGTGAAAACAGTTCAGATATCAAGTTAGATATTTCAACAAGGACACAAGCTATTGATAGTCCTTTATCCACTCAACAAACAAGCATAAACCTCTTTCCATCTTCTTCTAGACCAACAGGAGTTCCTCATCAACTCTTTCAAACAAATTCAAGACAAGACATTCAGTGTCAAAAGATTGATCACATGGTTAAAGAAGAAAGCTTGAGTAACATGTTTTGTTCCATGGATGAACAATCTGGATTATGGCCATGGTTGGAACAACAACACTTCAATTGA 846 0.383 MAFFPANFMLQSSHQDDHHQPPPSLNSIITSCAPQDYHGGVSFLGKRSMSFSGIELGEEANVEEELSDDGSQLGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDNIKADNDALQAQNQKLQTEILALKNREPTESINLNKETEGSSSNRSENSSDIKLDISTRTQAIDSPLSTQQTSINLFPSSSRPTGVPHQLFQTNSRQDIQCQKIDHMVKEESLSNMFCSMDEQSGLWPWLEQQHFN* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2535 281 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Mal5g2535 281 CDD homeodomain 76 132 IPR001356 GO:0003677
Mal5g2535 281 Coils Coil 123 171 - -
Mal5g2535 281 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Mal5g2535 281 SUPERFAMILY Homeodomain-like 70 133 IPR009057 -
Mal5g2535 281 SMART HOX_1 74 135 IPR001356 GO:0003677
Mal5g2535 281 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Mal5g2535 281 MobiDBLite consensus disorder prediction 176 198 - -
Mal5g2535 281 MobiDBLite consensus disorder prediction 179 198 - -
Mal5g2535 281 Gene3D - 68 137 - -
Mal5g2535 281 PRINTS Lambda-repressor HTH signature 111 127 IPR000047 GO:0003677
Mal5g2535 281 PRINTS Lambda-repressor HTH signature 102 111 IPR000047 GO:0003677
Mal5g2535 281 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 281 IPR045224 GO:0003700
Mal5g2535 281 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 281 - -
Mal5g2535 281 Pfam Homeobox associated leucine zipper 131 171 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2535 Mal-Chr5 72575232 72577052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2535 1 281 Homeobox Transcription Factor Family AT1G69780 63.051 2.94e-120 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal5g2535 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2535 K09338 - gmx:100801479 483.411