Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2530 ATGTCTAGCAGAAGATCTCGTTCGAGACAATCTGGTGTTTCTACTGATATCTCTGATGCTCAAATTAATGATCTTGTTACCAAGTTACAACAACTTGTCCCTGAACTTGCAAGGCGTTCCCACAAGGTTTCAGCTTCTAAGGTGTTGCAAGAGACTTGCAATTACATCAAAAACTTGCATAGAGAGGTTGATGATTTAAGTGACCGATTGTCACAACTTTTGGACACCATAGACCCTAACAGTGCTCAAGCAGCTATCATTAGGAGCTTACTTATGTGA 279 0.405 MSSRRSRSRQSGVSTDISDAQINDLVTKLQQLVPELARRSHKVSASKVLQETCNYIKNLHREVDDLSDRLSQLLDTIDPNSAQAAIIRSLLM* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2530 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 59 IPR011598 GO:0046983
Mal5g2530 92 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Mal5g2530 92 CDD bHLH_AtPRE_like 17 76 - -
Mal5g2530 92 Coils Coil 56 76 - -
Mal5g2530 92 Gene3D - 4 88 IPR036638 GO:0046983
Mal5g2530 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 83 IPR036638 GO:0046983
Mal5g2530 92 PANTHER TRANSCRIPTION FACTOR PRE6 1 92 - -
Mal5g2530 92 Pfam Helix-loop-helix DNA-binding domain 21 59 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2530 Mal-Chr5 72365390 72366736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2530 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 71.277 6.05e-38 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal5g2530 HLH 4.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2530 - - gmx:100791371 142.124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2530 5 72365390 72366736 Mal5g2530 5 72365390 72366736 ECH
Mal5g2530 5 72365390 72366736 Mal2g4866 2 110108572 110110040 ECH
Mal5g2530 5 72365390 72366736 Mal3g0159 3 5831458 5834225 ECH
Mal5g2530 5 72365390 72366736 Mal6g3775 6 110134934 110137289 ECH