Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2495 ATGGCTGATCTTCCGAAAAGCGACAGTAGGGATATCGAGCAGGCAATTACATCTCTTAAGAAAGGTTCATATCTTCTAAAGTATGGGCGAAGAGGGAAGCCAAAGTTCTGCCCTTTTAAGCTTTCCAATGATGAGTCTCTACTCATATGGTACTCTGGCAAGGAAGAAAAAAAAATTAAGCTCAGTACTGTTTCAAAGATCATTCCCGGGCAGCGAACTGCAACATTTCAGCGGTATCCCCGACCTGAAAAGGAGTATCAGTCATTTTCTCTTATATACAATGATCGGTCCTTGGATTTGATCTGCAAGGACAAAGATGAAGCTGAAATCTGGTTTGCCGGTCTGAAAGCGTTAGTTACCCGAGGTAACTATCGCAAGTGGCGATTTGAATCAAGACCTGAAAGTCTGTATTCTGAAAGTCCAAAGTCTGGCACAAGAAGATCCACTCCATCATATACACCATTTCAGGACCCTGGAGATGTCGACGGAGTTGCTTTTCAAAATTCTTCAGAAAATAAATGGGTAAAGGCTTTCTCTGAAATAATTTCATATACCGCACCTTCCAATAGCTCAAGTCAAGCTGAATCAATTACCAATTACTCAATATCCTCTGGGTCCGTGGATAACTCAAGCAATCGAAATTCTGCATCCGAGGCAATTCGAGTTAGTCTATCTAGTGCTGTAAGTTCCTCCAGTCAGGGTTCTTGTAATGAAGATTTTGATGCCTTAGGTGATGTTTTTATTTGGGGAGAAAGTCTCAATGATGGAATTCTTGGTGGTGGTCTGCATAAAGTTGGAAGCATATCTATTTCGGAGATGGATGCATTCCTTCCCAGGGCATTGGAATCAAAAGTGGTTCTCGATGTTCATAGTATTGGATGTGGCTATAAACACGCTGTTCTAGTTACCAAGCAGGGAGAAATATTTAGCTGGGGCGAGGAGTCAGGAGGTAGGCTTGGACATGGTGCAGAAGTGGACGTTTTTCACCCTAAGCTCATCGATACTCTTAGTGGCATGAACATTGAGTTAGTAGCATGTGGAGAATATCATACTTGCGCTGTTACTTATTCTGGGGATCTTTATACCTGGGGTGATGGTACTCACAATTCTGGGTTACTTGGGCATGGGAATGAAGTTAGTCTCTGGATTCCTAAGAAAGTAGGTGGTGCATTGGAAGGATTACATGTATCATATGTGTCCTGCGGACCTTGGCACACAGCTATTGTTACATCAACTGGGCAGTTGTTTACATTTGGTGATGGAACTTTTGGTGCCTTAGGCCATGGAGATCATAGCAGCTCAAATATTCCTCGGGAAGTAGAAGCTTTGAAAGGGTTGAGAACAACCAGGGTTTCATGTGGTGTTTGGCACACTGCTGCAGTTGTCGAGGTGATAAATGAATCTGTGGAATCTTCTAGTCAGTCGTCTAGTGGAAGACTGTTCACCTGGGGCGATGGAGATAAAGGCCAACTTGGATATGTTGATAAGGAACCTAGACTAGTTCCCGTGTCTGTAATTGCATTGGCTAATGAAAACATTTGTCGTGTAGCTTGTGGCCACAGTCTTACAGTTGTATTGACAACGTCAGGACATGTATATACAATGGGAAGTACAGCTTACGGACAACTTGGTTGTCCTAAAGCAAGTGGGAAGGTCCCTATACGTGTTGAAGATACAATTGCTGACAGTTTCATAGAAGATATTGCCTGTGGTTCGTATCATGTTGCAGTCCTAACTTCCAAGGCAGAGATTTACACATGGGGAAAGGGTTTAAATGGGCAATTAGGTCATGGTGACAATGGTCATAGGAATAAGCCCACACTTGTCGAGTTTTTAAAAGATAAGCAAGTGAAGAGTGTTTTTTGTGGTTCAAACTTTACTGCTGTTGTTTGCCTTCATAAATGGATACCGAGTGTCGATCATTCTGCATGTTCAGGCTGTCGTAATCCATTTAACTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTTTTTTGCAAATTATGCACCAGCAAGAGATCTATGAGAGCTTCCCTTGCTCCAAACACCGCCAAGACATATCGTGTTTGTGATGACTGTTATTATAAACTTAAGAAAACTGCTGAATCAATAACCTTGCCAATTCCTACCTGGAGAAGTGTCAGTTTGCAAGACAGTAAGGCTGCTAAAACACAGGGAAGACTATTAAGACTTTCTTCGTTTGGTTCTAATGTTCATTCTGAAAGCAGTCATTCAAAGCTTCCAGAATCACACGATAGCCATATTTTTCCGGTTTTGAATGGAAAACTACAGCTGGGGGGTTTTGTTATTTCAAAATCATCAAACTCTCTTTCCGGGGAATCTAGGAAATACCAGTCTATTTCTGAGCTTGCTACACGAATATCTTGTCAGTCAACCTCTCCAGTTTCATCAAAGTCAAGTCCACGGCAATCCTGTGAAGATATTATGCAGTCTGATTTAAAACACAGAAATGATATTCTAAGTCACGAAGTTATAAGTTTAAAAGCACAGGTTGAAGATCTTACTCAGAAGTCAAAAAGTCTTGAGGCTGAACTTGAGAGAACGTCAAAGCAATTGAAGGAAGTGACTGCAGTAGCTGCAGGTGAAGCTGGAAAGTGTAAATCTGCAAAAGAGGTTATAAAGTCATTGAAAACTCAGTTGAAGGAAATGATGCAAACATTACCAGAAGTACATAATGATGACTCAAGCATAGATTCCTATGTTGAAACCACTAATAGTATTGTAGATCAATCCTTAGATGAGAGTCATATAACAAACATTATCACTCCCCAAAATCAAAGCGGCAGCAATGCAGAAAATATGGTATTGCCTAATGGTGTTACAACACAAAATGGAAAAGCAGAATGGGTGGTGCAAGATGAACCAGGTGTGTACGTAAGTTTGTCCTCCCTTCCAGGTGGTGGTAATGAACTTAAGCGCGTTCGCTTCAGTCGAAGGCATTTCACAGAACAAGAAGCTGAAAAGTGGTGGTCTGAAAATGGTACCAAAGTGTTGGAGCGGCACAATGTAGCTGCCTTGTAG 3048 0.415 MADLPKSDSRDIEQAITSLKKGSYLLKYGRRGKPKFCPFKLSNDESLLIWYSGKEEKKIKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFAGLKALVTRGNYRKWRFESRPESLYSESPKSGTRRSTPSYTPFQDPGDVDGVAFQNSSENKWVKAFSEIISYTAPSNSSSQAESITNYSISSGSVDNSSNRNSASEAIRVSLSSAVSSSSQGSCNEDFDALGDVFIWGESLNDGILGGGLHKVGSISISEMDAFLPRALESKVVLDVHSIGCGYKHAVLVTKQGEIFSWGEESGGRLGHGAEVDVFHPKLIDTLSGMNIELVACGEYHTCAVTYSGDLYTWGDGTHNSGLLGHGNEVSLWIPKKVGGALEGLHVSYVSCGPWHTAIVTSTGQLFTFGDGTFGALGHGDHSSSNIPREVEALKGLRTTRVSCGVWHTAAVVEVINESVESSSQSSSGRLFTWGDGDKGQLGYVDKEPRLVPVSVIALANENICRVACGHSLTVVLTTSGHVYTMGSTAYGQLGCPKASGKVPIRVEDTIADSFIEDIACGSYHVAVLTSKAEIYTWGKGLNGQLGHGDNGHRNKPTLVEFLKDKQVKSVFCGSNFTAVVCLHKWIPSVDHSACSGCRNPFNFRRKRHNCYNCGLVFCKLCTSKRSMRASLAPNTAKTYRVCDDCYYKLKKTAESITLPIPTWRSVSLQDSKAAKTQGRLLRLSSFGSNVHSESSHSKLPESHDSHIFPVLNGKLQLGGFVISKSSNSLSGESRKYQSISELATRISCQSTSPVSSKSSPRQSCEDIMQSDLKHRNDILSHEVISLKAQVEDLTQKSKSLEAELERTSKQLKEVTAVAAGEAGKCKSAKEVIKSLKTQLKEMMQTLPEVHNDDSSIDSYVETTNSIVDQSLDESHITNIITPQNQSGSNAENMVLPNGVTTQNGKAEWVVQDEPGVYVSLSSLPGGGNELKRVRFSRRHFTEQEAEKWWSENGTKVLERHNVAAL* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2495 1015 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 292 302 IPR000408 -
Mal5g2495 1015 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 413 464 IPR000408 -
Mal5g2495 1015 Pfam Transcription factor regulating root and shoot growth via Pin3 955 1010 IPR013591 -
Mal5g2495 1015 ProSiteProfiles BRX domain profile. 956 1011 IPR013591 -
Mal5g2495 1015 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 530 581 IPR000408 -
Mal5g2495 1015 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 1009 - -
Mal5g2495 1015 MobiDBLite consensus disorder prediction 136 155 - -
Mal5g2495 1015 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 707 IPR013083 -
Mal5g2495 1015 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 478 529 IPR000408 -
Mal5g2495 1015 SUPERFAMILY RCC1/BLIP-II 243 635 IPR009091 -
Mal5g2495 1015 Coils Coil 875 895 - -
Mal5g2495 1015 Gene3D - 369 639 IPR009091 -
Mal5g2495 1015 Pfam Transcription factor BRX N-terminal domain 871 893 IPR027988 -
Mal5g2495 1015 Pfam Regulator of chromosome condensation (RCC1) repeat 306 354 IPR000408 -
Mal5g2495 1015 Pfam Regulator of chromosome condensation (RCC1) repeat 357 408 IPR000408 -
Mal5g2495 1015 Pfam Regulator of chromosome condensation (RCC1) repeat 529 578 IPR000408 -
Mal5g2495 1015 Pfam Regulator of chromosome condensation (RCC1) repeat 477 526 IPR000408 -
Mal5g2495 1015 Pfam Regulator of chromosome condensation (RCC1) repeat 583 630 IPR000408 -
Mal5g2495 1015 Pfam Regulator of chromosome condensation (RCC1) repeat 413 461 IPR000408 -
Mal5g2495 1015 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 1009 - -
Mal5g2495 1015 Gene3D - 167 368 IPR009091 -
Mal5g2495 1015 Pfam Pleckstrin homology domain 13 119 IPR001849 -
Mal5g2495 1015 PRINTS Chromosome condensation regulator RCC1 signature 308 324 IPR000408 -
Mal5g2495 1015 PRINTS Chromosome condensation regulator RCC1 signature 358 374 IPR000408 -
Mal5g2495 1015 PRINTS Chromosome condensation regulator RCC1 signature 577 598 IPR000408 -
Mal5g2495 1015 PRINTS Chromosome condensation regulator RCC1 signature 519 537 IPR000408 -
Mal5g2495 1015 PRINTS Chromosome condensation regulator RCC1 signature 415 429 IPR000408 -
Mal5g2495 1015 PRINTS Chromosome condensation regulator RCC1 signature 399 415 IPR000408 -
Mal5g2495 1015 CDD PH_PLC_plant-like 10 120 - -
Mal5g2495 1015 SMART fyve_4 630 701 IPR000306 GO:0046872
Mal5g2495 1015 Coils Coil 826 867 - -
Mal5g2495 1015 Pfam FYVE zinc finger 634 700 IPR000306 GO:0046872
Mal5g2495 1015 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 244 305 IPR000408 -
Mal5g2495 1015 SUPERFAMILY FYVE/PHD zinc finger 634 708 IPR011011 -
Mal5g2495 1015 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 638 700 IPR017455 -
Mal5g2495 1015 Gene3D - 10 126 IPR011993 -
Mal5g2495 1015 SUPERFAMILY PH domain-like 11 119 - -
Mal5g2495 1015 MobiDBLite consensus disorder prediction 135 162 - -
Mal5g2495 1015 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 412 IPR000408 -
Mal5g2495 1015 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 582 633 IPR000408 -
Mal5g2495 1015 CDD FYVE_like_SF 643 696 - -
Mal5g2495 1015 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 451 461 IPR000408 -
Mal5g2495 1015 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 306 357 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2495 Mal-Chr5 70623330 70632456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2495 949 1012 Major Intrinsic Protein MIP AT1G31880 50.000 6.50e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2495 - - pvu:PHAVU_003G066900g 1360.51