Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2480 ATGGAAGAGAGAAATGGTTGTGAGAAACCTGAAGAGGTTATGCTTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAACTTGTTGGATTTTACCTAAAGAAAAAGATTCAGCAACGCCCTCTTGCTATTGAGCTCATCAAGCAGCTTGATATTTACAAATTTGATCCATGGGATCTACCAAAGTTGGCAAGTACAGGGGAGAAAGAGTGGTATTTTTATTGTCCAAGAGACAGAAAGTACAGGAACAGTGCAAGACCTAATAGGGTAACAAGAGCTGGGTTTTGGAAAGCAACAGGAACAGATAGGCCTATTTATTCCTCAGAGGGTTCTAAGTGTATTGGCTTGAAAAAGTCCTTAGTTTTCTACAAAGGTAGAGCTGCTAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTCTCATAGACTCATCATCATCTCCAAAGAAATATGTAGACAAGACCATTCCTGCCAATGAATCTTGGGCAATATGCAGGATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTCTCTCTCACTCATGGGTCCCACCTTTACTTGAAACATCAACCTCTAATGTTCTAACAAATGATGGAAACCACAACCAATTTTGTGCATCAAACATGATGTTCACAAAGAAACCTAGCTTTGCAAGCCACTCTAGTACTACTAATAACCACAATAACTTAACACAACACTTAACCTCTTCTAGTAGTACTACACTTTGTCCCTTAGATGTTCCATCTTATAATAATCCAATTATTGATCCATTGATTTACAAACCCTTATACCGGTTACCAATTTCAAATGATCAAGATCTTAACCTTAGCACTGGCTTAGTATTCTCATCTCCTCTTGAAACATCTTGTAACAAAACTTCAATGGATGTTTCTTCCTTGCTATTAGGTATGTCATCTGAAGTAACAACCTCAAACTACATTGGTAATTTACAAGACCATTACAATAATGGGTATCCATTAATGACTAATACTCCAAATGTGAATGTGCCACGTGTCGATGAGCAAGAGTTGGAGACAGTAAGATCCAATATTGGATTTCCATTTAGTGTGCCTTTCAATATTGGTGATGCATGGAAGTCATCAAGTCTTGTTTGGGATACTTCCTCTTGTACTTCTGATGAACCCTCTAGTTATTCTACGACCAAGTGTTATACTTAG 1191 0.3804 MEERNGCEKPEEVMLPGFRFHPTDEELVGFYLKKKIQQRPLAIELIKQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLIDSSSSPKKYVDKTIPANESWAICRIFKKTNATAQRALSHSWVPPLLETSTSNVLTNDGNHNQFCASNMMFTKKPSFASHSSTTNNHNNLTQHLTSSSSTTLCPLDVPSYNNPIIDPLIYKPLYRLPISNDQDLNLSTGLVFSSPLETSCNKTSMDVSSLLLGMSSEVTTSNYIGNLQDHYNNGYPLMTNTPNVNVPRVDEQELETVRSNIGFPFSVPFNIGDAWKSSSLVWDTSSCTSDEPSSYSTTKCYT* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2480 396 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 394 - -
Mal5g2480 396 PANTHER PROTEIN FEZ ISOFORM X1 1 394 - -
Mal5g2480 396 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Mal5g2480 396 Gene3D NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
Mal5g2480 396 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
Mal5g2480 396 SUPERFAMILY NAC domain 11 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2480 Mal-Chr5 69468095 69470272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2480 1 262 NAC Transcription Factor Family AT1G26870 60.949 3.05e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mal5g2480 NAM 7.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2480 - - vun:114179488 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2480 5 69468095 69470272 Mal5g2480 5 69468095 69470272 ECH