Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2475 ATGGACATGACCTCAAGAAACATAGATGCAACAACAGATTCTCAAACACCACCATCAACAAAACCCAACATGACAACAACAACCTTAAAATCTTCTTCACCTTTCACAAACGGCACACATAAACGCCACCTCACAACCACCACCACTCCACCACCGCCACAACAACAACAACCACTAGCATCATCCATGGTTGTTTCTTACAAAGAATGTCTCAAAAACCATGCTGCATCCCTAGGTGGACATGCACTTGATGGATGTGGTGAATTCATGCCACCATCATCCATTAATCCTAATGACCCTAGATCTCTCAAATGTGCTGCTTGTGGCTGCCACCGTAACTTCCACCGCCGTGACCCACAAGAGCAAATCCTCACCACCACCACTTCCAACACCACCACCGCCGTAACAGCCACCACGAACAACAACAAAAACAGCCCCCCTTTTCTTAGCTGTATCTACACAACACCTTCAACAACGGTTCCACCACCACAACCACCACCACCATTACCACTACCACACCGTGGCCCAATAAGTCAAAGCACAAGCCCAAGTCAAAGTACAAGCCCAAGTCATAGCCCAAGCCCAATTTCAAGCCCATCATCACCACCACCACTCTCACATTTACCACCTTCTTATCATCATCACTCTTCAGCTCCACACATGCTATTAGCACTTGGAGGAAATGCTTATTCAACACCACCACACTCTGATCATGATCAACACCACCACCACCAAAACCATCTTCAAAGAAATCTCAATTTTGCAACTTCAGTGGTTAAGCTTGAGAGCAACAACAACAACAACACAAGTAGTGGGAAAAAGAGGTACAGGACAAAATTCAGCAAGGAACAGAAAGAGAAGATGCATGGTTTTTCTGAGAAATTGGGTTGGAGAATGCAAAAGGGTGATGATGGATTGGTTCAGAAATTCTGCAATGACATTGGTGTTTCTAGAGGAGTTTTCAAAGTTTGGATGCATAACAACAAGAATAGTAGTTTGAGGAAGAAATCAGAATCTGATGTTGGAAATGGAATTTCTACTCAAATTGATAATAAGAACAATGATGGTAATAATAATGATGGCTCCACCAACAATGTCATTCATCATATGAATGAAGATGGATGTGTCAATGTTCATGTTTCTTCTGTTAATGCTTTATCTTCTTAA 1167 0.4267 MDMTSRNIDATTDSQTPPSTKPNMTTTTLKSSSPFTNGTHKRHLTTTTTPPPPQQQQPLASSMVVSYKECLKNHAASLGGHALDGCGEFMPPSSINPNDPRSLKCAACGCHRNFHRRDPQEQILTTTTSNTTTAVTATTNNNKNSPPFLSCIYTTPSTTVPPPQPPPPLPLPHRGPISQSTSPSQSTSPSHSPSPISSPSSPPPLSHLPPSYHHHSSAPHMLLALGGNAYSTPPHSDHDQHHHHQNHLQRNLNFATSVVKLESNNNNNTSSGKKRYRTKFSKEQKEKMHGFSEKLGWRMQKGDDGLVQKFCNDIGVSRGVFKVWMHNNKNSSLRKKSESDVGNGISTQIDNKNNDGNNNDGSTNNVIHHMNEDGCVNVHVSSVNALSS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2475 388 Pfam ZF-HD protein dimerisation region 65 119 IPR006456 -
Mal5g2475 388 MobiDBLite consensus disorder prediction 337 362 - -
Mal5g2475 388 MobiDBLite consensus disorder prediction 125 248 - -
Mal5g2475 388 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 53 339 - -
Mal5g2475 388 MobiDBLite consensus disorder prediction 1 60 - -
Mal5g2475 388 Gene3D - 259 333 - -
Mal5g2475 388 MobiDBLite consensus disorder prediction 195 209 - -
Mal5g2475 388 MobiDBLite consensus disorder prediction 125 157 - -
Mal5g2475 388 MobiDBLite consensus disorder prediction 1 50 - -
Mal5g2475 388 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 273 330 IPR006455 -
Mal5g2475 388 MobiDBLite consensus disorder prediction 262 285 - -
Mal5g2475 388 MobiDBLite consensus disorder prediction 175 194 - -
Mal5g2475 388 MobiDBLite consensus disorder prediction 158 174 - -
Mal5g2475 388 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 53 339 - -
Mal5g2475 388 MobiDBLite consensus disorder prediction 331 362 - -
Mal5g2475 388 SUPERFAMILY Homeodomain-like 263 331 IPR009057 -
Mal5g2475 388 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 118 IPR006456 -
Mal5g2475 388 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 67 118 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2475 Mal-Chr5 69242653 69243819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2475 53 336 ZF-HD Transcription Factor Family AT1G69600 39.527 9.36e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mal5g2475 ZF-HD_dimer 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2475 - - mtr:MTR_8g467340 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2475 5 69242653 69243819 Mal5g2475 5 69242653 69243819 ECH