Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2462 ATGGATCTTCTGTGCAGTGCGTATTCGAATTCGTCAGACGAAGAAGAAGAAGATCAACCCAAACGACAAAAATTCTCTCACACCAATACTTCTCTACCTTCCAATCTCCATTCACAGCAACCTCCGATTCTTCCAGGTAGCTACGTTTCCAAACGTCAACGCGCATCATCATCATCATTGGTTTCCATCTCTACTGCTACTTCTACATCTCTTTCCTCACCATCGTCTTCTTTCACACTATCTGGGAGTATCTCGGAGGCTGATGTACCCCATAACATTTTAGCATTGTTGAAAAGTAAAGCAAAGGATCATCAAAACCTGAACTCAGTGTTTGAAAAGCTGTCTGCAACCCTATCTGGACATACAAGAGCTGTCAATGCTATACATTGGTCATCAACTAATGTTCACCTCCTTGCATCTGCTGGGATGGACAATTTGGTTTGCATATGGAACGTATGGAGCAGGGATAAGAAGAAAGCATGTGTGCTAAACTTCCACAATGCAGCAGTGAAAGATGTGAAATGGTCTAAACAAGGGCACTTCTTGCTTTCTTGTGGATATGATTGCACATCAAGGTTGGTTGATGTTGAAAAGGGGATGGAAACTCAGGTTTTCAGAGAAGATCAAATTGTTGGAGTTATAAAGTTCCATCCAGACAATTCAAGTCTCTTCCTTTCTGGGGGATCAAAGGGCCATATCAAGCTATGGGATATCAGAATCGGCAATGTTGTGCATAACTATAATCGTAATTTAGGTTCTATTCTAGATGTTGAGTTTACAACAAATGGGAAGCAATTCATTTCTTCTAGTGATGTATCTGGGAGCAATATCAGTGAGAATTCTATTATTGTTTGGGATGTGTCAAGACAGGTACCGTTGTCAAATCAGGTTTATGTGGAAGCTTATACTTGTCCTTGCGTTAGGAGCCACCCCTTTGATCCAGCTTTTGTCGCCCAATCAAACGGGAATTATATTGCAATCTTTAGTACCACTCCACCATACAGACTCAACAAATATAAGAGATATGAGAACCATGGGGTTTCTGGGTTCCCAATTAAGTGCAATTTCAGCTTAGATGGGAAGAAGCTTGCATCTGGCTCTTCAGATGGATCTATATACCTTTATGATTATCAGTCATCCAAAGTTTTGAAGAAAATAAAGGCCTTTAACCAAGCATGCATGGACATTGCCTTCCACCCTGTTATGCCTAATGTTATTGCTTCATGCTCATGGGATGGAAGTATTTTGGTATTTGAATAG 1260 0.4063 MDLLCSAYSNSSDEEEEDQPKRQKFSHTNTSLPSNLHSQQPPILPGSYVSKRQRASSSSLVSISTATSTSLSSPSSSFTLSGSISEADVPHNILALLKSKAKDHQNLNSVFEKLSATLSGHTRAVNAIHWSSTNVHLLASAGMDNLVCIWNVWSRDKKKACVLNFHNAAVKDVKWSKQGHFLLSCGYDCTSRLVDVEKGMETQVFREDQIVGVIKFHPDNSSLFLSGGSKGHIKLWDIRIGNVVHNYNRNLGSILDVEFTTNGKQFISSSDVSGSNISENSIIVWDVSRQVPLSNQVYVEAYTCPCVRSHPFDPAFVAQSNGNYIAIFSTTPPYRLNKYKRYENHGVSGFPIKCNFSLDGKKLASGSSDGSIYLYDYQSSKVLKKIKAFNQACMDIAFHPVMPNVIASCSWDGSILVFE* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2462 419 MobiDBLite consensus disorder prediction 25 49 - -
Mal5g2462 419 SUPERFAMILY WD40 repeat-like 112 418 IPR036322 GO:0005515
Mal5g2462 419 SMART WD40_4 198 237 IPR001680 GO:0005515
Mal5g2462 419 SMART WD40_4 240 286 IPR001680 GO:0005515
Mal5g2462 419 SMART WD40_4 111 151 IPR001680 GO:0005515
Mal5g2462 419 SMART WD40_4 156 195 IPR001680 GO:0005515
Mal5g2462 419 SMART WD40_4 337 376 IPR001680 GO:0005515
Mal5g2462 419 SMART WD40_4 379 419 IPR001680 GO:0005515
Mal5g2462 419 ProSitePatterns Trp-Asp (WD) repeats signature. 138 152 IPR019775 -
Mal5g2462 419 Gene3D - 95 419 IPR015943 GO:0005515
Mal5g2462 419 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 11 419 - -
Mal5g2462 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 152 - -
Mal5g2462 419 Pfam WD domain, G-beta repeat 344 376 IPR001680 GO:0005515
Mal5g2462 419 Pfam WD domain, G-beta repeat 214 237 IPR001680 GO:0005515
Mal5g2462 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 152 IPR001680 GO:0005515
Mal5g2462 419 MobiDBLite consensus disorder prediction 1 49 - -
Mal5g2462 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 246 IPR001680 GO:0005515
Mal5g2462 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 385 IPR001680 GO:0005515
Mal5g2462 419 Pfam Eukaryotic translation initiation factor eIF2A 115 185 IPR013979 -
Mal5g2462 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 163 204 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2462 Mal-Chr5 68488881 68509282 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2462 113 375 U-box Gene Family AT1G04510 23.105 4.83e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2462 K24742 - gmx:100790592 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2462 5 68488881 68509282 Mal5g2462 5 68488881 68509282 ECH