Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2390 ATGAACGAGAAAGCCAACGTTTCTAAGGAACTCAACGCCAAACACAAAAAGATACTAGAAGGACTTCTGAAATTACCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGACCAAGATGGGCTAGTGTCAATCTTGGCATTTTTATTTGCATGAGTTGTTCAGGAATACATCGAAGTCTTGGCGTACATATTTCTAAGGTTCGTTCTGCTACATTGGACACATGGCTCCCAGAGCAGGTTGCATTTATTCAATCTATGGGAAATGAGAAAGCAAATAGTTACTGGGAGGCAGAATTACCCCCAAATTATGACAGAGTTGGCATTGAAAACTTCATTCGTGCAAAGTATGAAGACAAGAGATGGGTTGCAAGGGATGCTAAGCCAATATCACCTTCTAGACTGGTAGAAGAGAAAAGTCCTTTACAATGGCAAAAGCCCGTGGAGAATACCTTTGAGGAAAGGAAGAAAATCCAACCATCAAATGCAATTCCTGCAACTAGAATTAGTGTTCTTGCTCCTCCTAAAGGACATGTGCAGGTAACTCCAGTGGCTAAACATCAGCATATTGAGAAAGTGGAACCTCCGGTACCACAAGTGCAAGCTGAAACATCACAGATGACTACTACTACAGCTCATAATCCCCCTCCAAAAGTTGACTTTGCGACGGACCTTTTTGACATGTTGTCTATGGATGATCCAAAAGAAAAGGGCTCTGGCGCAGCTGATGCTATTGCTGATGATGATAACAACTGGGCAGGTTTTCAGTCTGCTGCAGAGACGTCAACAGATGAGAAAACTGACACCAGGAAATCGGTTGAGAGTACACCCCGGCCCACCTCTGGAATTGAGGATCTATTTAACGACTCATCTTCAGTGACGCCAAGTTCTTCTCTTGAAAAACCACAAAAAGATGTAAAAAATGATATTATGAGCCTCTTTGAAAAGAATAATATAGCGTCTCCATTTGCTATGCATCAACAACAATTGGCTATGCTGGCACAGCAACAGTCTCTTCTAATGGCAGCTGCTGCTGCTGCTGCTAAATCTGCTAGTGGGGATGTGAAATATCCTGCTAATGTACAGCAACCTGGTCCCAATATTCCTTTCCAAAATTGGCCAGCTGCAAGCTACCCAATTCCAGGAGTAATGCCCGTGGGTGGTCAGGGAGAATTGCAGAAACTTATGCAGACAATGAACATGACATCCGCTCATCCAGCAGTGAGCTCAGTTCAGTATCCACCATCTAGTTTTTTTACAATGCCGCAAGTTGCTCCAGTTAATGGCACAACGACAACGGTAGCAAGTAAACCTCAATCAGCAACTCCGGTATCGTCAAACACTACACAAACGGCGAATGATTATGATTTTTCCTCATTAACTCAAGGAATGTTTGCGAAACCATGA 1407 0.4314 MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMSCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWVARDAKPISPSRLVEEKSPLQWQKPVENTFEERKKIQPSNAIPATRISVLAPPKGHVQVTPVAKHQHIEKVEPPVPQVQAETSQMTTTTAHNPPPKVDFATDLFDMLSMDDPKEKGSGAADAIADDDNNWAGFQSAAETSTDEKTDTRKSVESTPRPTSGIEDLFNDSSSVTPSSSLEKPQKDVKNDIMSLFEKNNIASPFAMHQQQLAMLAQQQSLLMAAAAAAAKSASGDVKYPANVQQPGPNIPFQNWPAASYPIPGVMPVGGQGELQKLMQTMNMTSAHPAVSSVQYPPSSFFTMPQVAPVNGTTTTVASKPQSATPVSSNTTQTANDYDFSSLTQGMFAKP* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2390 468 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Mal5g2390 468 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Mal5g2390 468 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Mal5g2390 468 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Mal5g2390 468 CDD ArfGap 19 117 - -
Mal5g2390 468 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Mal5g2390 468 MobiDBLite consensus disorder prediction 258 304 - -
Mal5g2390 468 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Mal5g2390 468 PANTHER ARF GTPASE ACTIVATOR 1 467 - -
Mal5g2390 468 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Mal5g2390 468 MobiDBLite consensus disorder prediction 274 301 - -
Mal5g2390 468 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Mal5g2390 468 MobiDBLite consensus disorder prediction 430 455 - -
Mal5g2390 468 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 467 IPR044520 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2390 Mal-Chr5 65415541 65422164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2390 16 118 C2H2 Transcription Factor Family AT4G05330 51.351 1.26e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2390 K12486 - gmx:100807561 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2390 5 65415541 65422164 Mal5g2390 5 65415541 65422164 ECH