Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2365 ATGCGTGGAGAGAAAGAGATAAGAGAGGGAGGAGCTTGTGGTTATGATGATACCTTTCATGCTGGGTTTGGAGTGAACACAGCAGCAGTGAGCACTATGCTATTCAGAGAGGGTGAGGTTTGTGGTGCATGCTACCAAGTCATATGTGACTATAAGATCGATCCAAAATGGTGTCTTAGAAGTCGAAGTGTTACAATAACTGCCACAAATTTTTGTCCTCCGAACAATCACGGAGGATGGTGTGATCCTCCGCACCATCACTTTGATATGTCCATGCCTGCTTTCTTCCGCATTGCACGACAAGGCAATGAAGGAATTGTTCCTGTCCTTTATAGAAGGGTAGCATGCAAAAGAAGAGGAGGAGTTAGGTTCACATTGAAGGGTCAATCCAATTTCAACATGTTGATGATAACAAATGTGGGTGGCAGTGGTGATGTGAAGAGAGTGTGGATTAGAGGATCAAGAAGTGGAGCTTGGTTGCCATTGCATAGAAATTGGGGAGCTAATTGGCAAAGCAATGCAGATCTAAGGAACCAGAGACTCTCATTCAAAGTTACTTTAGTTGATGGTAAAACATTGGTATTTCACAATGTGGTGCCTTCCAATTGGAGATTTGGACAAACATTTTCATCCCACATTCAATTCTTTTAG 651 0.427 MRGEKEIREGGACGYDDTFHAGFGVNTAAVSTMLFREGEVCGACYQVICDYKIDPKWCLRSRSVTITATNFCPPNNHGGWCDPPHHHFDMSMPAFFRIARQGNEGIVPVLYRRVACKRRGGVRFTLKGQSNFNMLMITNVGGSGDVKRVWIRGSRSGAWLPLHRNWGANWQSNADLRNQRLSFKVTLVDGKTLVFHNVVPSNWRFGQTFSSHIQFF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2365 216 PRINTS Expansin signature 64 74 IPR002963 GO:0009664
Mal5g2365 216 PRINTS Expansin signature 197 213 IPR002963 GO:0009664
Mal5g2365 216 PRINTS Expansin signature 120 132 IPR002963 GO:0009664
Mal5g2365 216 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Mal5g2365 216 PRINTS Expansin signature 51 62 IPR002963 GO:0009664
Mal5g2365 216 PRINTS Expansin signature 132 153 IPR002963 GO:0009664
Mal5g2365 216 PRINTS Expansin signature 78 95 IPR002963 GO:0009664
Mal5g2365 216 PRINTS Expansin signature 22 36 IPR002963 GO:0009664
Mal5g2365 216 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 131 211 IPR007117 -
Mal5g2365 216 Pfam Expansin C-terminal domain 122 200 IPR007117 -
Mal5g2365 216 PANTHER EXPANSIN-A12 10 215 - -
Mal5g2365 216 SUPERFAMILY Barwin-like endoglucanases 10 139 IPR036908 -
Mal5g2365 216 SMART dpbb_1 27 111 IPR007112 -
Mal5g2365 216 Gene3D - 1 117 IPR036908 -
Mal5g2365 216 SUPERFAMILY PHL pollen allergen 118 211 IPR036749 -
Mal5g2365 216 PANTHER EXPANSIN-A15 10 215 IPR002963 GO:0009664
Mal5g2365 216 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 10 121 IPR007112 -
Mal5g2365 216 Pfam Lytic transglycolase 27 111 IPR009009 -
Mal5g2365 216 PRINTS Expansin/Lol pI family signature 31 49 IPR007118 GO:0005576
Mal5g2365 216 PRINTS Expansin/Lol pI family signature 9 27 IPR007118 GO:0005576
Mal5g2365 216 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Mal5g2365 216 PRINTS Expansin/Lol pI family signature 159 173 IPR007118 GO:0005576
Mal5g2365 216 PRINTS Expansin/Lol pI family signature 104 120 IPR007118 GO:0005576
Mal5g2365 216 Gene3D - 121 216 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2365 Mal-Chr5 62701639 62703155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2365 10 211 Expansin Gene Family AT3G15370 71.782 7.91e-109 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2365 - - gmx:106795376 416.001