Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2328 ATGGAAGCTAGGAGTATTGAGAGAAAGAGAACATTGATGATGGAAAAGATGAGAAGGAACAACGCAGTGGAAGAAGAAGTGGAAAATGAAGTAGAAGAAGAGGATGTTGATGTTAGTCTGACTGAAGAAGAGAAGAAGAAAGGGGTCAGTGGCGGCAGAAGAGGAACTGGTGGGGGTGTTTCTCCACCGTCTTGCCAAGCAGAGAGGTGTGGAGCTGATTTGACTGATGCAAAGAGATACCATCGCCGCCATAAGGTGTGTGAGTTTCATTCCAAGGCACCAGTTGTGGTGGTTGCAGGGATGAGGCAGAGGTTTTGCCAACAATGTAGCAGGTTCCATGACTTGGTAGAGTTTGATGAATCCAAAAGAAGCTGCCGCAGGCGGTTGGCTGGACACAATGAACGGCGCAGGAAAACCAACCCAGAAGCTGCCAATGAGGGCAGCAGCAACAGCAAAGGACAACATCAACCTAAGGATACTACACAGTGCAGGATTCAGATGAACTTACCAGGAAGTTCTGGCTATAAGTCCTTCAACATTAGGTGA 546 0.4762 MEARSIERKRTLMMEKMRRNNAVEEEVENEVEEEDVDVSLTEEEKKKGVSGGRRGTGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGMRQRFCQQCSRFHDLVEFDESKRSCRRRLAGHNERRRKTNPEAANEGSSNSKGQHQPKDTTQCRIQMNLPGSSGYKSFNIR* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2328 181 Coils Coil 6 44 - -
Mal5g2328 181 MobiDBLite consensus disorder prediction 129 181 - -
Mal5g2328 181 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Mal5g2328 181 MobiDBLite consensus disorder prediction 1 25 - -
Mal5g2328 181 MobiDBLite consensus disorder prediction 1 68 - -
Mal5g2328 181 SUPERFAMILY SBT domain 63 143 IPR036893 GO:0003677|GO:0005634
Mal5g2328 181 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 157 IPR044817 GO:0003677
Mal5g2328 181 MobiDBLite consensus disorder prediction 143 181 - -
Mal5g2328 181 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 157 - -
Mal5g2328 181 Pfam SBP domain 65 138 IPR004333 GO:0003677
Mal5g2328 181 Gene3D - 55 126 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2328 Mal-Chr5 61724723 61725697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2328 1 181 SBP-box Gene Family AT3G15270 47.283 2.87e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mal5g2328 SBP 2.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2328 - - aprc:113864686 246.899