Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2317 ATGGCGAAAACCAAACCAGGCAAAAAGGATTTAGACTCATATACAATAAGAGGAACAAACAAGATCGTAAGAGCTGGAGAATGTGTTCTGATGCGACCAACGGAGACATCGAAGCCACCGTACGTAGCACGAGTAGAGAAGATGGAACAAGACAAAAGGAACAATGTGAGGGTACGAGTGAGGTGGTATTACAGACCTGAAGAATCAATTGGTGGTCGCAGACAGTTTCATGGTGCTAAGGAGCTTTTCCTTTCTGACCATTACGATGTTCAGAGTGCTCACACTATTGAAGGAAAATGTGTTGTTCACTCTTTTAAGAATTATACTAAGCTCGACAATGTTGCTTCTGAGGATTATTATTGTCGATTTGAGTATAAGGCTTCTACTGGTGCTTTCACTCCTGACCGTGTTGCTGTGTATTGCAAATGTGAAATGCCTTATAACCCAGATGACCTCATGGTACAATGTGAGGGGTGCAAGGATTGGTACCATCCTGCTTGCGTGGGCGTGACTATTGAAGAAGCAAAGAAACTAGACCATTTTGTTTGCGCTGAGTGTTCATCTGATGACGACACAAAGAAACCCCAAACTACATTCTCTTCATCACCAGGATCGGATAGCAAGGTGGAGCCGAAGCGGCGGAAGAGAGGACCATAA 657 0.4399 MAKTKPGKKDLDSYTIRGTNKIVRAGECVLMRPTETSKPPYVARVEKMEQDKRNNVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLDNVASEDYYCRFEYKASTGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGVTIEEAKKLDHFVCAECSSDDDTKKPQTTFSSSPGSDSKVEPKRRKRGP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2317 218 PANTHER OS08G0421900 PROTEIN 2 213 - -
Mal5g2317 218 Gene3D - 1 134 IPR043151 -
Mal5g2317 218 Pfam BAH domain 23 135 IPR001025 GO:0003682
Mal5g2317 218 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Mal5g2317 218 PANTHER BNAC03G64850D PROTEIN 2 213 IPR045205 GO:0006325|GO:0035064
Mal5g2317 218 CDD BAH_BAHCC1 22 156 - -
Mal5g2317 218 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Mal5g2317 218 SUPERFAMILY FYVE/PHD zinc finger 131 191 IPR011011 -
Mal5g2317 218 Pfam PHD-finger 140 188 IPR019787 -
Mal5g2317 218 SMART PHD_3 140 187 IPR001965 -
Mal5g2317 218 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Mal5g2317 218 SMART BAH_4 21 136 IPR001025 GO:0003682
Mal5g2317 218 MobiDBLite consensus disorder prediction 186 218 - -
Mal5g2317 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 200 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2317 Mal-Chr5 61503047 61505876 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2317 31 132 Core DNA Replication Machinery Family AT4G14700 28.155 5.03e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal5g2317 BAH 6.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2317 K25868 - gmx:100800993 419.083