Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2288 ATGGCCTTGCTGTGTGGTTCACCATCAGTGACCTTCCCTTCATCATCTTCATTCACTCAACACAAGAATTCAACTACTAAATCTTCTTCATTTGTTGGTTCCCAATTGCCACTTCCAAACCTTTCATTATCTTCTTCTTCTTCTTCTTCTTCAATTCGTAGTACCCATTTCTCTCCATCTTTCATTATCCGTTCTCAGCAACAGGACACTTCCTTGGTTGAACAAGATCCACGCTTCATCTGTGTTGAACCTGAGCCCCGATTTCAAGGCCCGGACATTTGGAACACCACTTGGTATCCAAAAGCTTCAGATCATGTCAATACAGAGAAAACATGGTATATTGTCGATGCTACAGATAAAATTCTTGGAAGATTAGCATCAACAATTGCTAATCACATCCGAGGGAAAAATCTAGTCACTTATACACCGAGTGTGGACATGGGTGCATTTGTAATTGTGATAAATGCAGAAAAGGTTGCTGTAAGCGGGAAAAAGAGGACCCAAAAGCTTTATCGGCGGCACTCAGGTCGACCTGGTGGTATGACAGTTGAGACATTTGACCAGCTGCAGAACAGAATTCCTGAAAGAATTATTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGGAGGCTTGGCAGGACTCTATTCACACGCCTGAAGGTTTATAGCGGCCCAAATCATCCACATGAAGCGCAGCAGCCCATTGATTTGCCAATTAGGGATAAGAGAATACAGTTGCAGAGATAA 747 0.4297 MALLCGSPSVTFPSSSSFTQHKNSTTKSSSFVGSQLPLPNLSLSSSSSSSSIRSTHFSPSFIIRSQQQDTSLVEQDPRFICVEPEPRFQGPDIWNTTWYPKASDHVNTEKTWYIVDATDKILGRLASTIANHIRGKNLVTYTPSVDMGAFVIVINAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQNRIPERIIEHAVRGMLPKGRLGRTLFTRLKVYSGPNHPHEAQQPIDLPIRDKRIQLQR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2288 248 Pfam Ribosomal protein L13 110 228 IPR005822 GO:0003735|GO:0005840|GO:0006412
Mal5g2288 248 TIGRFAM rplM_bact: ribosomal protein uL13 106 237 IPR005823 GO:0003735|GO:0005840|GO:0006412
Mal5g2288 248 ProSitePatterns Ribosomal protein L13 signature. 202 224 IPR023563 GO:0003735|GO:0005840|GO:0006412
Mal5g2288 248 Hamap 50S ribosomal protein L13 [rplM]. 112 247 IPR005822 GO:0003735|GO:0005840|GO:0006412
Mal5g2288 248 MobiDBLite consensus disorder prediction 1 21 - -
Mal5g2288 248 Gene3D Ribosomal protein L13 101 244 IPR036899 GO:0003735|GO:0005840|GO:0006412
Mal5g2288 248 SUPERFAMILY Ribosomal protein L13 107 239 IPR036899 GO:0003735|GO:0005840|GO:0006412
Mal5g2288 248 CDD Ribosomal_L13 112 225 IPR005822 GO:0003735|GO:0005840|GO:0006412
Mal5g2288 248 PANTHER BNAA02G18970D PROTEIN 69 248 - -
Mal5g2288 248 PANTHER RIBOSOMAL PROTEIN L13 69 248 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2288 114 247 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 30.370 3.69e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2288 K02871 - gmx:100305981 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2288 5 58645192 58649562 Mal5g2288 5 58645192 58649562 ECH