Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2264 ATGGATTTCACCACAAACATCACCGACCTACCTCCCAACAAGCGACTCAGATTCATTCATCAACAACAACAACAACAAGAGCAAGATCTTAGTCTCTGTTCACTCTTACCCACCAAAAAACGCAAAGAATCTCGAAACTCATCACTTTTTCACACCCCACCATCAACATCAACACCCCCACCATCTGTTTATTCTCTACCCACCAAGAAAAGAGTAATCGCCTTACAACCTCACCTTCACCACAACGCCCCAAAAGATGCTGTTCCGCTTATTGATCTCAACGTTGAATACAATCCTTCTCTTCCCTCACCCACCCCAACCGAAAAACAATCTAGAAAACAGGACATCAACTTCGAAGTTGACGACGATGGGATTTTATGCTGTGTATGCCATAGCACCGACGCTAATGCTGAGGACCCAATCGTTTTCTGCGATGGTTGCAATTTAATGGTCCATGCTTCCTGCTACGGTAACCCTCTGGTGAAACAGATCCCAGAAGGTGACTGGTTCTGTGATCAGTGTCGTTTTAAAAACGATACTGATCCAATTCGTTGCTCTCTCTGTCCAACGAAAGAGGGAGCAATGAAACAAACAACAGATGGAAAATGGGCCCACCTGGTGTGTGCTTTGCTTGTTCCTGAAGTGTTTTTTGTAGATCCAGAAGGGAGAGAAGGGATCGATTGTTCTAAGGTTCCAAAGAAGAGGTGGTTGGAGAAGTGCTATATCTGTGGGTGTTGTGACGGGTGTGCTTTGGTTTGTTCTGAACAGAAGTGTGGTTTGGGTTTTCATATTACTTGTGGAATCAAAGAGGATCTTTGTATTGAGTATAAGGAAGGGAAGAAAGGTGCTACTGTTGTTGCTGGTTTTTGCAAAACCCATTCTCAAATCTGGGAAAAGAACAAGGGATCTGGGAAATACAAGATTGTTGCAGTTGAAGATAAAAAGTAG 948 0.4357 MDFTTNITDLPPNKRLRFIHQQQQQQEQDLSLCSLLPTKKRKESRNSSLFHTPPSTSTPPPSVYSLPTKKRVIALQPHLHHNAPKDAVPLIDLNVEYNPSLPSPTPTEKQSRKQDINFEVDDDGILCCVCHSTDANAEDPIVFCDGCNLMVHASCYGNPLVKQIPEGDWFCDQCRFKNDTDPIRCSLCPTKEGAMKQTTDGKWAHLVCALLVPEVFFVDPEGREGIDCSKVPKKRWLEKCYICGCCDGCALVCSEQKCGLGFHITCGIKEDLCIEYKEGKKGATVVAGFCKTHSQIWEKNKGSGKYKIVAVEDKK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2264 315 MobiDBLite consensus disorder prediction 43 63 - -
Mal5g2264 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 296 IPR013083 -
Mal5g2264 315 Pfam PHD-finger 139 175 - -
Mal5g2264 315 SMART PHD_3 126 175 IPR001965 -
Mal5g2264 315 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 104 - -
Mal5g2264 315 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 107 301 - -
Mal5g2264 315 CDD PHD_BRPF_JADE_like 126 174 - -
Mal5g2264 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 181 IPR013083 -
Mal5g2264 315 PANTHER PHD FINGER PROTEINS 107 301 - -
Mal5g2264 315 ProSiteProfiles Extended PHD (ePHD) domain profile. 182 294 IPR034732 -
Mal5g2264 315 ProSiteProfiles Zinc finger PHD-type profile. 124 177 IPR019787 -
Mal5g2264 315 ProSiteProfiles Zinc finger RanBP2 type profile. 165 194 IPR001876 -
Mal5g2264 315 SUPERFAMILY FYVE/PHD zinc finger 119 190 IPR011011 -
Mal5g2264 315 Pfam PHD-zinc-finger like domain 184 293 - -
Mal5g2264 315 PANTHER PHD FINGER PROTEINS 6 104 - -
Mal5g2264 315 ProSitePatterns Zinc finger RanBP2-type signature. 169 188 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2264 Mal-Chr5 57307100 57308357 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2264 22 315 C2H2 Transcription Factor Family AT3G14740 48.758 1.37e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal5g2264 zf-HC5HC2H_2 2.2e-25 CL0390