Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2239 ATGCTGAGAAATCTACAAGAATACGATTCAAGTTACTCCGATTCTCTGTTTGTTCGCATTATAGCATGCAGATTATGCTGTACTCGTAATCCCAGGCGCAAGAAATTCGATGAAATCCAACCGTTGGATAACATGGAGTTTCTTGAGATGCTCGGAGAAGGCGGTTTCGGTAGAGTTTTCCGATGCCGCGATGTCAAAGCTAATCGCATCGTGGCCGTTAAACAAATCTCCATTCTTGACACTTACGATGCAGTTCCTGGTTCCATCATCAGAGAAGTCTCGTTTCTTAAAGAATTGAATCATCCTAACATTGTTAGGTTATTGAATGTAATGAACAGGAAGGGAACAAGATTCGTGAATCTGGTTTTTGAGTATCTTGATTGTGATCTTAATGATTACATTAGAGATAATGAACGTTACGGTTCATCTATTAATGATCACATGACTAGAAAGAGTTTTCTGTATCAGATACTGTCTGCAGTGGAGTACTGTCATTCTCATAAGGTTATTCACAGAGATTTGAAACCAAGGAATCTTCTGATTGATCATTCTAAAAAGATAATCAAGCTTGCTGATTTTGGTTTGGCTAGAGAGTTAGGAGATCCTGACATGCTATACACTGAGAAGGTTGCAACTAGATGGTATAGGGCACCTGAAATATTGTTTGAATGTGGTCAATATTCAACTCCAATTGATATTTGGTCTGTGGGCTGTATTTTTGGTGAGATGGTACTTGGACAACCAATACTCCGAGCAATTGATTGCAAGGATGAGCTAGAGACGATTTTCAGAATGTTCGGTACCCCAACAGAGGAAACATGGCCAGGGGTCACTAAATTATGTGCTAACCTTCAAACCTACCCGAAATTTAAACCAACGGACCTGTCAACAGTTTTTTCTGCTCTTGATCCAATTGGTCTTAATCTTCTAACGAGGATGCTTTGCCTAGACCCAAGTAAGAGGATTTCTGCCGAAGCTGCTCTAAGACATGCTTACTTTGATGACTTGGATCCGGTTATTAAAGGAAAATCAAAGTCTTAA 1041 0.3967 MLRNLQEYDSSYSDSLFVRIIACRLCCTRNPRRKKFDEIQPLDNMEFLEMLGEGGFGRVFRCRDVKANRIVAVKQISILDTYDAVPGSIIREVSFLKELNHPNIVRLLNVMNRKGTRFVNLVFEYLDCDLNDYIRDNERYGSSINDHMTRKSFLYQILSAVEYCHSHKVIHRDLKPRNLLIDHSKKIIKLADFGLARELGDPDMLYTEKVATRWYRAPEILFECGQYSTPIDIWSVGCIFGEMVLGQPILRAIDCKDELETIFRMFGTPTEETWPGVTKLCANLQTYPKFKPTDLSTVFSALDPIGLNLLTRMLCLDPSKRISAEAALRHAYFDDLDPVIKGKSKS* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2239 346 SMART serkin_6 45 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g2239 346 Gene3D Transferase(Phosphotransferase) domain 1 129 345 - -
Mal5g2239 346 Pfam Protein kinase domain 46 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g2239 346 Gene3D Phosphorylase Kinase; domain 1 28 127 - -
Mal5g2239 346 CDD STKc_CDK_like 46 333 - -
Mal5g2239 346 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Mal5g2239 346 ProSiteProfiles Protein kinase domain profile. 45 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g2239 346 SUPERFAMILY Protein kinase-like (PK-like) 41 337 IPR011009 -
Mal5g2239 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Mal5g2239 346 PANTHER CYCLIN-DEPENDENT KINASE 23 339 - -
Mal5g2239 346 PANTHER CELL DIVISION PROTEIN KINASE 23 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2239 Mal-Chr5 56725434 56730731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2239 42 336 Core Cell Cycle Gene Families AT3G48750 49.492 8.35e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Mal5g2239 Pkinase 8.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2239 K02206 - gmx:100799974 356.681