Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2238 ATGACTTGTTTTCCTTTCTTATTTGGTAAGAAAGTGTCTTCTGATGTAAAACGAGATCCTGAAATCGATCAAGGACTTTCCGGCATTCGAATTAAAGTTTATACCTACAAAGAACTAAAAATTGCCTCTGACAATTTCAGCCCGGCTAATAAAATCGGCGAGGGTGGTTTTGGTTCTGTCTATAAGGGAGTGCTAAAAGGTGGGAAGTTAGCCGCTATAAAAGTTCTTTCAACTGAATCAAAACAGGGAGTGAAGGAATTCTTGACCGAAATTAATGTGATTTCAGAAATAAAGCATGAAAATTTGGTTATACTATATGGTTGCTGTGTGGAAGGAGATCACCGAATATTAGTCTACAATTACCTCGAGAACAATAGCCTTTCACAAACCCTTCTAGCTGGAGGTCACAGTAATATCTATTTTGATTGGCAAACACGACGTAGGATATGCATTGGAGTTGCACGTGGACTTGCCTTTCTCCATGAGGAAGTACAACCACATATTGTTCACCGGGATATAAAAGCAAGCAATATTCTCCTCGACAAAGATCTTACACCTAAGATTTCAGATTTCGGTCTCGCAAAACTTATTCCATCATACATGACTCATGTCAGCACACGTGTTGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGGCAGTTGACACGTAAAGCAGATATTTACAGTTTCGGGGTCCTCCTTGTAGAGATAGTCAGTGGGAGATCTAACACAAATACAAGATTACCAATTGCAGATCAATATATTCTAGAAACGACATGGCAACTTTTTGAGCGAAAGGAATTGGTACAGTTGGTAGACATATCATTAAACGGGGGATTCGATGCCGAGGAGGCTTGTAAAATTCTGAAGATTGCCCTTCTTTGTACTCAGGATACTCCTAAGCTCCGGCCAACCATGTCTTCTGTGCTCAAAATGCTCACCGGAGAAATGGATATTAATGAAAGTAAGATAACAAAACCAGGCTTGATTTCAGATGTCATGGACCTTAAAGTTAGACAACCTAAAAAAAATATAGATATGGGGACAGCTCCATCTTCATACAATGCTTCATCTAGCTCAGATAGCCAGGGTACTACTACCATTTCATTGGCTGCTTCAACTGCTGCAACTTCATCCTTTACAGTAAAATATGATCAAAGCTTGTGA 1179 0.3969 MTCFPFLFGKKVSSDVKRDPEIDQGLSGIRIKVYTYKELKIASDNFSPANKIGEGGFGSVYKGVLKGGKLAAIKVLSTESKQGVKEFLTEINVISEIKHENLVILYGCCVEGDHRILVYNYLENNSLSQTLLAGGHSNIYFDWQTRRRICIGVARGLAFLHEEVQPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVSGRSNTNTRLPIADQYILETTWQLFERKELVQLVDISLNGGFDAEEACKILKIALLCTQDTPKLRPTMSSVLKMLTGEMDINESKITKPGLISDVMDLKVRQPKKNIDMGTAPSSYNASSSSDSQGTTTISLAASTAATSSFTVKYDQSL* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2238 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Mal5g2238 392 Gene3D Phosphorylase Kinase; domain 1 16 121 - -
Mal5g2238 392 Pfam Protein kinase domain 49 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g2238 392 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 373 - -
Mal5g2238 392 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g2238 392 PANTHER - 2 373 - -
Mal5g2238 392 Gene3D Transferase(Phosphotransferase) domain 1 122 331 - -
Mal5g2238 392 CDD STKc_IRAK 52 319 - -
Mal5g2238 392 SUPERFAMILY Protein kinase-like (PK-like) 27 317 IPR011009 -
Mal5g2238 392 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g2238 392 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2238 Mal-Chr5 56720875 56724173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2238 21 323 Receptor kinase-like Gene Family AT1G53430 55.700 2.21e-111 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mal5g2238 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2238 - - gmx:100797706 597.43