Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2204 ATGGAGAGAAGGAATGGGAGGAAGTATAAGAATAGTGTAAGGCCAAACAGAATAACTAGCTCTGGCTTCTGGAAAGCAACTGCAATAGACAAGAAAGTGTGCTCATTGAAAGGAAAAGGAAATGATTGCATAATAGGACTCAAGAAAACACTTGTTTACTACCTTGGCAGTGCTGGTAAAGGCACAAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCTTCTAATATTGTTGGTACCAACACCAAGAATAATGCAACTATTGCTCAAGAAGCTGTAAGAAATTAA 288 0.3819 MERRNGRKYKNSVRPNRITSSGFWKATAIDKKVCSLKGKGNDCIIGLKKTLVYYLGSAGKGTKTDWMMHEFRLPSNIVGTNTKNNATIAQEAVRN* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2204 95 SUPERFAMILY NAC domain 6 78 IPR036093 GO:0003677|GO:0006355
Mal5g2204 95 Pfam No apical meristem (NAM) protein 6 73 IPR003441 GO:0003677|GO:0006355
Mal5g2204 95 Gene3D NAC domain 2 93 IPR036093 GO:0003677|GO:0006355
Mal5g2204 95 ProSiteProfiles NAC domain profile. 1 94 IPR003441 GO:0003677|GO:0006355
Mal5g2204 95 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 88 - -
Mal5g2204 95 PANTHER CONTAINING PROTEIN 9, PUTATIVE, EXPRESSED-RELATED 5 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2204 Mal-Chr5 54586141 54587104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2204 6 93 NAC Transcription Factor Family AT2G43000 67.045 2.54e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mal5g2204 NAM 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2204 - - lang:109334083 140.198