Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2115 ATGAATCGAATGGTGGGTGGTATTCGTGGTATGAATGGCGGAGTGATGATGATGCAGTGTATGGTAGATGATGTTGCTATCCTTGATGTTATGGGTCATCACGATCATCACCGCCACAACACAATAACAAGAAGAAGAAGGGTAGTGAATCGTCGTACATCGATGGTGTACCATGATGTTTCTTTGAATGTTGGAGGCCGACCATGGTCTAGGGTAGATAATGATTCTGCTATTCTCTTTGATATTGGTCACTACAACAACATGGCAACAAGAAGAAGGGTGAATCATGCGATGGATCAAAATTCTACTACTCAACAACATATTGAAACAACAACAACAAAAGGGTCTAGTTCTTCAAACTCGGAGTGCGATTCCATGTGCTGCATATGTCTTGGGGATTTAGTTACTGGTTCGACGCCAATTCAGATGCCGCAACGTTGTTGTAATCATGTATTTCACCGTGACTGCATTCAAAAGTGGCTCAATGTAAACAGGACATGTCCTCTTTGTCGTGGGAAAGTTTAG 525 0.4229 MNRMVGGIRGMNGGVMMMQCMVDDVAILDVMGHHDHHRHNTITRRRRVVNRRTSMVYHDVSLNVGGRPWSRVDNDSAILFDIGHYNNMATRRRVNHAMDQNSTTQQHIETTTTKGSSSSNSECDSMCCICLGDLVTGSTPIQMPQRCCNHVFHRDCIQKWLNVNRTCPLCRGKV* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2115 174 Pfam Ring finger domain 126 171 IPR001841 -
Mal5g2115 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 174 IPR013083 -
Mal5g2115 174 SUPERFAMILY RING/U-box 120 173 - -
Mal5g2115 174 SMART ring_2 127 170 IPR001841 -
Mal5g2115 174 PANTHER TARGET OF ERK KINASE MPK-1 66 173 - -
Mal5g2115 174 ProSiteProfiles Zinc finger RING-type profile. 127 171 IPR001841 -
Mal5g2115 174 MobiDBLite consensus disorder prediction 98 121 - -
Mal5g2115 174 PANTHER GB|AAF27103.1 66 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2115 Mal-Chr5 49907804 49908328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2115 127 174 C3H Transcription Factor Family AT5G54990 50.000 1.11e-10 56.6