Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2108 ATGGGTCGTCGCAAAATTGAGATTGCGATGGTGAGGGACCCTGCCACAAGGCAAGTCACATTTTCCAAGCGTCGATCAGGCTTATTCAAAAAGGCAAATGAGTTAGCCGTTTTGTGTGGGACAGAAATTGCTATTGTTGTGTTCTCTCCGGGGAATAAACCTTACTCTTTTGGGCACCCGAGTGTCGATGCTATTGCATCCAAGTTTTTAATAGGAGAGCCCAACCCAGATAATATCATAGGAAGCTCATCTTCTGAAAATCCCAACATAGAGGATCTGAATCAACAACTTGAAGATGTGCTGGCCGAAATTGGTGAGGCTGAAAAGGAAGCTAAGGTGCATGATGAGGTCTTAAAAGAATACAAACCGACCGAACTCACTCAACTTAAGGAATTGAAAGATTCATTCGTTGAGTTTAAGGATATGGTGAAATCACGTCTTTGTGATTTAGATACATCACAATCTATGTTGCTTCTTGCAAAGGAACCAGTGATTGGAGTTAAATACTAA 510 0.4157 MGRRKIEIAMVRDPATRQVTFSKRRSGLFKKANELAVLCGTEIAIVVFSPGNKPYSFGHPSVDAIASKFLIGEPNPDNIIGSSSSENPNIEDLNQQLEDVLAEIGEAEKEAKVHDEVLKEYKPTELTQLKELKDSFVEFKDMVKSRLCDLDTSQSMLLLAKEPVIGVKY* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2108 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal5g2108 169 Gene3D - 14 86 IPR036879 GO:0003677|GO:0046983
Mal5g2108 169 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 168 - -
Mal5g2108 169 SUPERFAMILY SRF-like 1 70 IPR036879 GO:0003677|GO:0046983
Mal5g2108 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal5g2108 169 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal5g2108 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal5g2108 169 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal5g2108 169 Coils Coil 90 110 - -
Mal5g2108 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Mal5g2108 169 PANTHER MADS BOX PROTEIN 2 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2108 Mal-Chr5 49780057 49780566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2108 1 161 Type I MADS-box Gene Family AT2G34440 41.860 1.20e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal5g2108 SRF-TF 6.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2108 - - mtr:MTR_1g054265 203.371