Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2101 ATGGGTACAATTCGTATTCGCGCTTATGGCGATTTTAATTCTTCAGCGGTCGACAAAGAGGCCCTTAATTCAGCCAACATTTCTCTAAACTCCATTACCGATTTGTCTTTTATCAAACCAAAAATAAATACCGTTGGAAAGGACGATACCTATAGGTATTTTCTTATGGATCTTAATAATTGGGTTTCCTTATATCCTCCACCCGTACACCTCTTTGTGATATTTGGTAATGGAGACTTCTCTAGCACTGGCATATTGCACCGGTTAAGAATGTGCAACTACAATATCTTGCTTGCATGTCCAGGAAGGCCTCATGTTGCTCTCTGCCATGCAGCAACTATAATATGGGAGTGGTCTTCGATGCTCAAGGGGGAAGACCTTACAGGAAAACATTTCAACTATCCTCCTGATGGTCCCTTTAATTCGTGGTATGGAATCTCAAATGTGCCTCTTGAAAACCCCTTCTCAGTTGCTGAGTTGCACACATCTTCACAAAATGCGGAGATCTACAAATCTTCTTTGGACATAAAGTTAGGTGAAAATATTGTGAAAATATTGTGTTTGCACCCAAATGGGATCTCTATGGGAGATCTTCGTGCACAGTTGACAAAGTGTGATATGCCTTTGGGTAAACGCTTCTATGGACAAAAAAAGTTTTCCGACTTTCTAATATCTATACCAGATTTACAACTCGAGTATTTAGGACAAGGTAATTTTTGGGTGCGTTTGGTCCCATCCACAACATCTGCTGTTAAGAATAAGCAGATGGATGGTGCCACAACTCAAAAGCTACAAAATGAGGGTAAAAATATGGATAGAAGTGCAGACGAGATTCCTAGAATATCCCCGTCGTGTGTTAGCAGCGAGGGTGATGATTTAAAATCATTCCAATCTAACAATGACACTGTTGATGTAACACCTGAAATTCTGGAAAAAATAAACCCTTCACAGAGTCGCTATACTTGTAATGATTGCACCATGTTGAAAAACAATGATATTGCAAATCTTGAACCCGAAAAAGTAGACAACAAACATGAGATTCCAACTAGAAAGGAGGTTGATGAAGTTTGCCGTAGCCCATTTACGTCAACTTTCTTTAGAAGGATTAGAAGTTGGTGGAGAAAGCTTAAGTTTTTTAAGGATTCAAAGTTATCTGAAGTAGATCAGAGTGCTAGTCATCCTCTGCGGCCTCATTGGGATACCTTTAGGGTTTCAGTATGGTGGGACTTTGACAGCTGTGGCGTCCCTTCCGACTTTAGCTTTTTGAATGTAGCACCTTCAATTATGGGAGTTCTTAGAGCTAACGGAATTAAGGGACCTATTCATATTGACGCCTATGGCGATGTTTCTCAACTTTCAGAGATCAAACAAGAAGCACTTTTCTTATCTGGCGTTGATCTCCACCACATTCCAGGTGGAATGAACAAGAACAAATGCTTTATGGATTGGCTTTCTCGAAATCCCCCACGCGGACACTTCTTTTTGATATCTGGTGAGAAAGACTTCGACTTCTCCAGCACATTGCATCGGACTTGGTGGAGGAGGAATGGCAACTTCTTGCTTGCATGTCCAGGAAAGGCTCATGGTTATGTCTGCAAAGTAGCAACTATAGTGTGGCAGTGGTCTTCAGTGCTCAAGGGGAAATATTTTACTGGAAAATATATCAAGCCTCTTCCTGATTGGTATATTAAGGCGTGGGTGCAGGTGCCTCTTGAATATCCTCCCGGGTGGTATAGAAACTCGAAGGCGCCTCATGAAAACCCCTTCTCAGCTGCTGAGGAGCCCACATATTCACAAAATGCAAAGATCCATGAACCTTCCACGTACATAAAGTTGTTTGAAGTTCAAAAGTCGGTTTCTACGCAGGTTAGGAAGGTATTGAGTTCATACCCGAATGGGATCTCCATTGGAGATCTTAATTTACAGTTGAGAGTGATTTTTGCTGGAGGCTTATGTGGATGTAAAAAATTTCCCGAAATTCTAGCATCTATACCACATGTACAACTCTTGTATATAGGGGATGATAATTTTTGTGTACGTTTGATACCATCAACAACATCTAATGTTAAGAAGAAACAGTTGGCTGTTAAGAATGAGCAGAGGGATGTCAATCATTCAGGAATGCATGTGTTATTTTCTACCAGTTCCTTTTGGGATGATGTGGAATCTTTTGTTTTCACGTCTAGAGGATCACGTCTTCTTTCCCGGTCAAGAAGCAGGGAGGATCTAGCTCATAGATTACAAAAGCATGGATCCTTGTTTTTTATGTCTCTCACTGAAAATAAAATCCTTCAATTGGTAGAATTGTTGATAGCAGAGAAGAAATGGTTGGAGGAAAGCCCCTCGCAAGCATTTCCTTTTAAGCTAATTAAATCAGTTCAGAATAGTTAA 2391 0.4057 MGTIRIRAYGDFNSSAVDKEALNSANISLNSITDLSFIKPKINTVGKDDTYRYFLMDLNNWVSLYPPPVHLFVIFGNGDFSSTGILHRLRMCNYNILLACPGRPHVALCHAATIIWEWSSMLKGEDLTGKHFNYPPDGPFNSWYGISNVPLENPFSVAELHTSSQNAEIYKSSLDIKLGENIVKILCLHPNGISMGDLRAQLTKCDMPLGKRFYGQKKFSDFLISIPDLQLEYLGQGNFWVRLVPSTTSAVKNKQMDGATTQKLQNEGKNMDRSADEIPRISPSCVSSEGDDLKSFQSNNDTVDVTPEILEKINPSQSRYTCNDCTMLKNNDIANLEPEKVDNKHEIPTRKEVDEVCRSPFTSTFFRRIRSWWRKLKFFKDSKLSEVDQSASHPLRPHWDTFRVSVWWDFDSCGVPSDFSFLNVAPSIMGVLRANGIKGPIHIDAYGDVSQLSEIKQEALFLSGVDLHHIPGGMNKNKCFMDWLSRNPPRGHFFLISGEKDFDFSSTLHRTWWRRNGNFLLACPGKAHGYVCKVATIVWQWSSVLKGKYFTGKYIKPLPDWYIKAWVQVPLEYPPGWYRNSKAPHENPFSAAEEPTYSQNAKIHEPSTYIKLFEVQKSVSTQVRKVLSSYPNGISIGDLNLQLRVIFAGGLCGCKKFPEILASIPHVQLLYIGDDNFCVRLIPSTTSNVKKKQLAVKNEQRDVNHSGMHVLFSTSSFWDDVESFVFTSRGSRLLSRSRSREDLAHRLQKHGSLFFMSLTENKILQLVELLIAEKKWLEESPSQAFPFKLIKSVQNS* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2101 796 Pfam OST-HTH Associated domain 738 795 IPR025677 -
Mal5g2101 796 PANTHER EMB|CAB71880.1 690 795 - -
Mal5g2101 796 PANTHER EMB|CAB71880.1 390 703 - -
Mal5g2101 796 PANTHER EMB|CAB71880.1 2 374 - -
Mal5g2101 796 PANTHER LIMKAIN B LKAP 690 795 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal5g2101 796 PANTHER LIMKAIN B LKAP 390 703 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal5g2101 796 CDD PIN_limkain_b1_N_like 403 524 - -
Mal5g2101 796 MobiDBLite consensus disorder prediction 266 298 - -
Mal5g2101 796 PANTHER LIMKAIN B LKAP 2 374 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal5g2101 796 Pfam NYN domain 403 503 IPR021139 GO:0004540
Mal5g2101 796 ProSiteProfiles OST-type HTH domain profile. 174 245 IPR025605 -
Mal5g2101 796 Pfam OST-HTH/LOTUS domain 617 668 IPR025605 -
Mal5g2101 796 Pfam OST-HTH/LOTUS domain 180 240 IPR025605 -
Mal5g2101 796 Gene3D - 177 244 IPR041966 -
Mal5g2101 796 CDD PIN_limkain_b1_N_like 6 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2101 Mal-Chr5 49552478 49563864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2101 403 547 C2H2 Transcription Factor Family AT5G61190 36.424 1.70e-18 89.0