Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2099 ATGGGTACAATTCATATTCGCGCTTATGGCGATTTTAATTCTTCAGCGGTCGACAAAGAGGCCCTTAATTTAGCCAACATTTCTCTAAATTCCATTACCGATTTTTCTTTTATCAAACCAAAAATAAATACCGTTGGAAAGAACAATACATATAAGCATTTTCTTATGGATCTTAATGATTGGGTTTCCACAAATCCTCCACCCGTACACCTCTTTTTGATATTTGGTAATGGAGACTTCTCTAGCAATGGCATTTTGCCCCGGTTAAGAATGTGCAACTACAATATCTTGCTTGCATGTCCAGGAAGAGCTCAAGCTGCTCTCTGCCATGCAGCAACTATAATGTGGGAGTGGTCATCGATGCTCAAGGGGGAAGACCTTACCGGAAAACATTTCAACTATCCTCCTGATGGTCCGTTTAGTTCGTGGTATGGAATCTCAAATGTGCCTCTTGAAAACCCCTTCTCAGTTGCTGAGTTGCACACATCTTCACAAAATGCGGAGATCTACAAACCTTTGGACATAAAGTTAGGTGAAAATATTGTGAAAATATTGTGTTTGCACCCAAATGGGATCTCTATGGGAGATCTTCGTGCACAGTTGACAAAGTGTGATATGCCTTTGGGTAAACGCTTCTATGGACAAAAAAAGTTTTCCGACTTTCTAATATCTATACCAGATTTACAACTCGAGTATTTAGGACAAGGTAATTTTTGGGTGCGTTTGGTCCCATCCACAACATCTGCTGTTAAGAATAAGCAGAAGGATGGTGTCACAACTCAAAAGCTACACAATGAGGGTAAAAATATGGATAGAAGTGTAGATGGGATTGACGGAATATCCTCATCGTGTGTCGAAAAGCCCAAGTCATCAGAACTGCAACATGATTTTAGTCACCATCCGAAGCCTCATTGGGATAACTTTAGGGTTTCGGTATGGTGGGACTTTGACAGCTGTGGCGTCCCTTCTGACATTAGCTTTTTGAATGTAGCACCTTCAATTATGGGAGTTATTAGAGGTAATGGAATTAAGGGCCCTATTCATATTGACGCTTATGGCGATGTTTCTCAGTTTTCAAAGATCAAACAAGAAACACTTTTCTTATCCGGCGTTGATCTCCACCACGTTCCAGGTGGAAAGAACAAGAACAAATGCTTTGCGGATTGGCTTTCTCGAAATCCCTCACCAGGACACCTCTTTTTGATATCCGGTGATAAAAACTTCGAATTCTTGTGCACAGTGCATCGGAAATGGTTCAGGAGGAATGACAACATCTTGCTTGCATGTCCAGGAAAGGCTCATGGTTTTATATGCAAAGTAGCAACTATAGTGTGGCAGTGGTCTTCTGTTCTCAAGGGGAAATATCTTATTGGAAAATATATCAGGTATCCTCCTGATTGGTATATTATGGCGCGGGTGCGGGTGCCTCTTGTGTATCCTCCCGAGTGGTATAGAAACTCGAAGGCGCCTCATGAGAACCCCTTCTCAGCTGTTGAGGAGCACACATCTTCTCAAAATGCAGAGATCAAGGAACCTTTATATAAAATTCCAGAGTCAGTTCCTAAAATTCCGGAGTCAGTTTCTAGGCATGTTAGGAAGGTATTGAGTTTATTCCCGAATGGGATCTCCATTGGAGATCTTGATTTACAGTTGAGCGTGATTTTTGCTGGAGGCTTATGTGGATGTAAAAAATTTCCCGAAATTCTAGCATCTATACCACATGTACAACTCTTGTATATAGGAGATGATAATTTTTGTGTACGTTTGATCCCATCAACAACATCTAATAATTTTAAGAAGCAGTGGGCTGTTAAGAATGAGCAGAGGGATATCAATCATTCAGGAATGCCTGCGTTGTTTTCTACTAGTTCCTTTTGGGATGATGTGGAATCTTTTGTTTTCACGTCTAGAGGATCACATCTTCTTTCCCGGTCAAGAAGCAGGGAGGATCTGGCTCATAGATTACAAAAGCATGGATCCCTGTGTTTTATGTCTCTCACTAAAAGTAAAACCCTTCAATTAGTAGAATTGTTGATAGCGGAGAAGAAATGGTTAGAGGAAAACCCCTCACAAGCATTTCCTTTTAGGATAACTAAATCTCTTCAAAAGAGCTAA 2115 0.4076 MGTIHIRAYGDFNSSAVDKEALNLANISLNSITDFSFIKPKINTVGKNNTYKHFLMDLNDWVSTNPPPVHLFLIFGNGDFSSNGILPRLRMCNYNILLACPGRAQAALCHAATIMWEWSSMLKGEDLTGKHFNYPPDGPFSSWYGISNVPLENPFSVAELHTSSQNAEIYKPLDIKLGENIVKILCLHPNGISMGDLRAQLTKCDMPLGKRFYGQKKFSDFLISIPDLQLEYLGQGNFWVRLVPSTTSAVKNKQKDGVTTQKLHNEGKNMDRSVDGIDGISSSCVEKPKSSELQHDFSHHPKPHWDNFRVSVWWDFDSCGVPSDISFLNVAPSIMGVIRGNGIKGPIHIDAYGDVSQFSKIKQETLFLSGVDLHHVPGGKNKNKCFADWLSRNPSPGHLFLISGDKNFEFLCTVHRKWFRRNDNILLACPGKAHGFICKVATIVWQWSSVLKGKYLIGKYIRYPPDWYIMARVRVPLVYPPEWYRNSKAPHENPFSAVEEHTSSQNAEIKEPLYKIPESVPKIPESVSRHVRKVLSLFPNGISIGDLDLQLSVIFAGGLCGCKKFPEILASIPHVQLLYIGDDNFCVRLIPSTTSNNFKKQWAVKNEQRDINHSGMPALFSTSSFWDDVESFVFTSRGSHLLSRSRSREDLAHRLQKHGSLCFMSLTKSKTLQLVELLIAEKKWLEENPSQAFPFRITKSLQKS* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2099 704 PANTHER EMB|CAB71880.1 610 704 - -
Mal5g2099 704 ProSiteProfiles OST-type HTH domain profile. 173 244 IPR025605 -
Mal5g2099 704 PANTHER EMB|CAB71880.1 2 284 - -
Mal5g2099 704 PANTHER EMB|CAB71880.1 287 609 - -
Mal5g2099 704 CDD PIN_limkain_b1_N_like 309 430 - -
Mal5g2099 704 PANTHER LIMKAIN B LKAP 2 284 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal5g2099 704 Gene3D - 176 243 IPR041966 -
Mal5g2099 704 Pfam OST-HTH/LOTUS domain 179 239 IPR025605 -
Mal5g2099 704 CDD PIN_limkain_b1_N_like 2 101 - -
Mal5g2099 704 PANTHER LIMKAIN B LKAP 610 704 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal5g2099 704 Pfam NYN domain 4 112 IPR021139 GO:0004540
Mal5g2099 704 Pfam NYN domain 309 416 IPR021139 GO:0004540
Mal5g2099 704 PANTHER LIMKAIN B LKAP 287 609 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2099 Mal-Chr5 49530189 49535118 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2099 309 453 C2H2 Transcription Factor Family AT5G61190 35.484 9.04e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2099 - - mtr:MTR_7g077430 583.178