Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2069 ATGGAAATTCTTAACTATCATTTGCCTTCTAAAATTTTATGCATAGTTGTGGGTATGGAGTTAAAGGTACAAGTTGACACAGATGAGATTAATACTCTAGTTACATTACTCCCGTTGCTTGAGCAACAAGAATATCTCGTAGAGGATAATCATGCACTTCATAGTCCAAGTGAAATCTACTCCTTTAGTAAGAGGCTCACTTCAATGGAAACAAGTGCAAATGGTGGACTTTATATTCCAAAGCAACATGCAGATAGATGCTTCCCCCCACTGAATATGACTGTTCAACCACCAATGCAAGATTTAGTGGCGAAGGACTTGCATGGAATTGAGTGGAATTTTCGACATATTTATCATGATCATGAGAGAGCACACTTGCTTACTAGTGGTTGGAGCACATTTGTAAACTCTAAAAAACTTCTTCCTGGAGATTCATGCATTTTTGTCAGTGGAGAGAATGGTGAGATTGGTATTGGGATTCGTCGAGCAATGAAACAACCTAGTGAAATATGCAAAAAGTCATCTCAACAATTGAATCAAAAGATTCATCTTGGAGCATTGGCTGCTGCTTCCCATGCTGTTTTAACAGGATCTTTGTTCCATGTCCAGTACCACCCTTGGGTTACTCCCTTTGAGTTTATGATTCCTCTGAAAACTTATGTTGAGTCACTTGAAAAGGATTACTCAATTGGAACAAGGGTACACATGTTGTCTGAAGCTGAAGGATGTCCAAGAAGATATGGTATAATTGTTGGTAATGAAGATATGGATCCTATAAAGTGGCCTGATTCGGAATGGAGATGTATCAAGGTTCAATGGGATCCAATACCATATACTTTGACACAACTTGAAAGGGTTTGTCCTTGGTGGATTGAGCCCTTGGTATCTCCCAAGATTAAGGGCATTCCTATTCTCCTTTTACCAAAAGAGGTTGGAAGTTCATCTAAACCTGAATATCACAAAGTGGATATGGACTTGGAAGGTCAAGATTGCAATACTGGAAATGATGGAAAATCAATTTTTTCCATTTTCAATTTCTTTATATGTCTTTGCTTTTTAACATTTGTAATTTTTGTCTTTCGTCCTATCATGTAA 1095 0.3772 MEILNYHLPSKILCIVVGMELKVQVDTDEINTLVTLLPLLEQQEYLVEDNHALHSPSEIYSFSKRLTSMETSANGGLYIPKQHADRCFPPLNMTVQPPMQDLVAKDLHGIEWNFRHIYHDHERAHLLTSGWSTFVNSKKLLPGDSCIFVSGENGEIGIGIRRAMKQPSEICKKSSQQLNQKIHLGALAAASHAVLTGSLFHVQYHPWVTPFEFMIPLKTYVESLEKDYSIGTRVHMLSEAEGCPRRYGIIVGNEDMDPIKWPDSEWRCIKVQWDPIPYTLTQLERVCPWWIEPLVSPKIKGIPILLLPKEVGSSSKPEYHKVDMDLEGQDCNTGNDGKSIFSIFNFFICLCFLTFVIFVFRPIM* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2069 364 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 296 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal5g2069 364 ProSiteProfiles B3 DNA-binding domain profile. 62 164 IPR003340 GO:0003677
Mal5g2069 364 SMART B3_2 62 164 IPR003340 GO:0003677
Mal5g2069 364 PANTHER AUXIN RESPONSE FACTOR 5 296 - -
Mal5g2069 364 Gene3D - 59 164 IPR015300 -
Mal5g2069 364 Pfam Auxin response factor 190 270 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mal5g2069 364 CDD B3_DNA 61 162 IPR003340 GO:0003677
Mal5g2069 364 Gene3D - 227 298 - -
Mal5g2069 364 SUPERFAMILY DNA-binding pseudobarrel domain 53 168 IPR015300 -
Mal5g2069 364 Pfam B3 DNA binding domain 62 163 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2069 Mal-Chr5 47231130 47241130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2069 6 297 B3 DNA Binding Superfamily AT5G62000 47.635 4.83e-92 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal5g2069 B3 9.9e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2069 - - mtr:MTR_8g446900 593.193