Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2042 ATGGGTCGTCGCAAAATTGATATGGAGATGGTAAAAAGCCCCTCTGCGAGGCAAGTCACATTCTCAAAACGTCGAACGGGATTATTCAAAAAAGCAAACGAGTTTGCGATCTTGTGTGGGACCACAATTGTTATTGTTGTGTTCTCTCCCGGGAATAAACCTTACTCTTTTGGCCACCCGAGTGTTGATGCTATTGCATCAAAATTTCTTCAACAAGATCCCAATCTAAATTTTGTCCTAGAAACCCCTTCCTCCAACATAGAGGATCTGAAACAACAACTTGAGGAGGTGATGACTGAAATAGATGAGGCTGAAAAGGGGGCTAAGGTCTATAATGAGACGCTAAAAGAATTCAAAGCGGCCCAACTCACTCAGCTCAAGGAATCGAAAGATTCATTAATAGAGTTTAAAGACATGGTGAAATCACGTCTTTGTGATTTAGAGATTTCACAATCTATGATGCTTCTTGCAAAGGAGCCCGTGGTTGGAATTAAAAACCAAATCACGGAAAAGAAGGGAAAATTTTAA 528 0.4053 MGRRKIDMEMVKSPSARQVTFSKRRTGLFKKANEFAILCGTTIVIVVFSPGNKPYSFGHPSVDAIASKFLQQDPNLNFVLETPSSNIEDLKQQLEEVMTEIDEAEKGAKVYNETLKEFKAAQLTQLKESKDSLIEFKDMVKSRLCDLEISQSMMLLAKEPVVGIKNQITEKKGKF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2042 175 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Mal5g2042 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Mal5g2042 175 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal5g2042 175 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Mal5g2042 175 Coils Coil 87 121 - -
Mal5g2042 175 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal5g2042 175 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal5g2042 175 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal5g2042 175 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal5g2042 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 167 - -
Mal5g2042 175 PANTHER MADS BOX PROTEIN 2 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2042 Mal-Chr5 45963294 45963821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2042 1 158 Type I MADS-box Gene Family AT2G34440 40.351 9.28e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal5g2042 SRF-TF 2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2042 - - mtr:MTR_4g131030 190.66