LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g1978	ATGTTGGAGTTACCATTCAACATGACACTTAACTTCCCTGCACTGCCTTTCAAGTCATTACCTTTTGCTCAAAACTTGGAGCCTGAAATTCTAAATGGTGCAATTGCTATAATTGCTGTTGGCCTAACGGCTGCATATATTTACTATCGCAAAAATCCCAAAGGTTGCTTGGACCCCAAAAATTTCAAAGAATTTAAACTTGTAAAGAAGACCATGATCAGCCCCAATGCTGCAAGATTCAAATTTGCCCTTCCTACTCCTAATTCGATCTTGGGCCTTCCTGTTGGAAAAAATATACTTGTCAGAGGAAGAGATAGTCAAGGAGAAGAAGTTATGAGATCATATACTCCAATCACTTTGGATTCAAATATTGGCTATTTTGAATTAGTTGTGAAGATGTACCCAAATGGAAAAATGTCCCACCATTTTAGACAAATGAAGGAAGGTGACAACTTGGCCGCGAGGGGTCCCAAGGGACGTTTCAGTTACAAACCTGGCCAAGTTAGGGCATTTGGAATGATTGCTGGAGGTTCAGGCATTACCCCTATGTTTCAGATCATAAGAGCCATACTGGAAAATCCAAAGGACAAAACAAAGGTGTACCTCATTTACGCCAACGTGACAGTGGACGATATACTACTAAAGGAAGAACTAGATGGCTTTGCAGACACATTTCCTCACAGATTCCATGTCTTTCACGTTCTTAATAAGCCACCTAATCAATGGAACGGTGGTGTTGGGTACATATCAAAGGAGATGATTGAATCACATTGTCCAGCACCTGCCCAGGATATCCAGATACTTAGGTGTGGTCCACCACCCATGAATAAAGCCATAGGAACTCATCTTGCCGCACTTGGATACACATCAAACATGCAGTTCGAGTTCTAA	891	0.4141	MLELPFNMTLNFPALPFKSLPFAQNLEPEILNGAIAIIAVGLTAAYIYYRKNPKGCLDPKNFKEFKLVKKTMISPNAARFKFALPTPNSILGLPVGKNILVRGRDSQGEEVMRSYTPITLDSNIGYFELVVKMYPNGKMSHHFRQMKEGDNLAARGPKGRFSYKPGQVRAFGMIAGGSGITPMFQIIRAILENPKDKTKVYLIYANVTVDDILLKEELDGFADTFPHRFHVFHVLNKPPNQWNGGVGYISKEMIESHCPAPAQDIQILRCGPPPMNKAIGTHLAALGYTSNMQFEF*	297

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g1978	296	SUPERFAMILY	Riboflavin synthase domain-like	54	165	IPR017938	-
	Mal5g1978	296	Pfam	Oxidoreductase FAD-binding domain	65	163	IPR008333	-
	Mal5g1978	296	ProSiteProfiles	Ferredoxin reductase-type FAD binding domain profile.	60	164	IPR017927	GO:0016491
	Mal5g1978	296	CDD	cyt_b5_reduct_like	65	296	-	-
	Mal5g1978	296	SUPERFAMILY	Ferredoxin reductase-like, C-terminal NADP-linked domain	153	291	IPR039261	-
	Mal5g1978	296	PANTHER	NADH-CYTOCHROME B5 REDUCTASE	1	296	IPR001834	GO:0016491
	Mal5g1978	296	Gene3D	-	157	293	IPR039261	-
	Mal5g1978	296	PANTHER	NADH-CYTOCHROME B5 REDUCTASE	1	296	-	-
	Mal5g1978	296	Pfam	Oxidoreductase NAD-binding domain	173	279	IPR001433	GO:0016491
	Mal5g1978	296	Gene3D	Translation factors	53	156	-	-
	Mal5g1978	296	PRINTS	Cytochrome B5 reductase signature	210	221	-	-
	Mal5g1978	296	PRINTS	Cytochrome B5 reductase signature	91	102	-	-
	Mal5g1978	296	PRINTS	Cytochrome B5 reductase signature	149	163	-	-
	Mal5g1978	296	PRINTS	Cytochrome B5 reductase signature	113	120	-	-
	Mal5g1978	296	PRINTS	Cytochrome B5 reductase signature	266	274	-	-
	Mal5g1978	296	PRINTS	Cytochrome B5 reductase signature	172	191	-	-
	Mal5g1978	296	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	172	191	IPR001709	GO:0016491
	Mal5g1978	296	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	210	221	IPR001709	GO:0016491
	Mal5g1978	296	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	266	274	IPR001709	GO:0016491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g1978	Mal-Chr5	43146060	43150608	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g1978	46	296	NADPH P450 reductases	AT5G17770	66.534	9.09e-133	376

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g1978	K00326		-	gmx:100784114	517.309