Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1973 ATGAAGAGGTCTCCACCATCTTCAAGTTCATCATCTTCATCTTCTATTGGATTTGAGAATCCAATTCAATCAGTGAAAAAAAGGGGTACTAAGAATCAAAAAAAGAATCTCAATGTCAAGTCACAGAATTTAAAGCAGAAGAAAAATCAAACAAGTGGTAGCAGCAGAAGAAGCTCAATTTACAGAGGAGTTACAAGACATAGGTGGACTGGGAGATTTGAAGCTCATCTATGGGATAAGACTTCTTGGAACAAGATTCAGAACAAGAAAGGAAAACAAGTTTATTTGGGTGCTTATGATACTGAAGAAGCAGCAGCTCGTACCTATGATCTTGCAGCACTTAAGTATTGGGGGAAGGATGCAACCTTGAATTTCCCGATAGAAACTTATGCAAAAGAGTTAGAGGAAATGGACAAAGCATCAAAAGAAGAGTATTTGAACTCTTTGCGGCGGCAAAGCAGTGGTTTTTCTAGAGGACTTTCTAAGTACCGTGGGGTTGCCAGGCATCACCATAATGGTCGATGGGAAGCTCGCATTGGAAGAGTTCGTGGTAACAAGTATCTCTACTTGGGCACATACAAAACTCAAGAGGAGGCAGCAGTGGCATATGATATGGCAGCAATAGAGCACAGAGGAGTGAATGCAGTGACAAATTTTGACATAAGCAACTATATAGACAAATTGAAGAAGAAAAATGATGAAACAGAACCACAAACAAACACAGAAATTGTTCCTAATTCCTCTGATTCTGAAGTAGCAGAAGAAGTACAAACACCAACTACACCCTTACAAGAAAATCAAATACAAATTGAACCTATGCAGCAACAATTTCAACATGTTCCTCCAACTGGTCAGGAACACACAATAGTTAATATTATGGATCATTGTTTTGACCAAGATTATCCATGGAGCTTCATGTATAATGGTTTGTCAGAGTTTCAAGACACGAACATGTCTTTCAAAACACCTGGTGAAGATTTAACCGATATATTCGATGGCTTAGGCTTTGTGGAAGACATTGATTTGATGTTCAACACAGAAGAACCTTGTGGTGGTGGTGAAAGTGATATCAATATCAATGAAGTTTTAGAGGGTATTGATCATTGTCGAGGAGTATTAAATGGAGATGCTGGAAACATGATTGTGGATGATGATAACAAGGAGAAGGAACTATTATCATTAGATTCTTCTTCACCATCATCTTCAACCACTACAGTTTCTTTGTAA 1227 0.3822 MKRSPPSSSSSSSSSIGFENPIQSVKKRGTKNQKKNLNVKSQNLKQKKNQTSGSSRRSSIYRGVTRHRWTGRFEAHLWDKTSWNKIQNKKGKQVYLGAYDTEEAAARTYDLAALKYWGKDATLNFPIETYAKELEEMDKASKEEYLNSLRRQSSGFSRGLSKYRGVARHHHNGRWEARIGRVRGNKYLYLGTYKTQEEAAVAYDMAAIEHRGVNAVTNFDISNYIDKLKKKNDETEPQTNTEIVPNSSDSEVAEEVQTPTTPLQENQIQIEPMQQQFQHVPPTGQEHTIVNIMDHCFDQDYPWSFMYNGLSEFQDTNMSFKTPGEDLTDIFDGLGFVEDIDLMFNTEEPCGGGESDININEVLEGIDHCRGVLNGDAGNMIVDDDNKEKELLSLDSSSPSSSTTTVSL* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1973 408 ProSiteProfiles AP2/ERF domain profile. 162 220 IPR001471 GO:0003700|GO:0006355
Mal5g1973 408 MobiDBLite consensus disorder prediction 238 252 - -
Mal5g1973 408 MobiDBLite consensus disorder prediction 35 60 - -
Mal5g1973 408 SMART rav1_2 162 226 IPR001471 GO:0003700|GO:0006355
Mal5g1973 408 SMART rav1_2 60 132 IPR001471 GO:0003700|GO:0006355
Mal5g1973 408 SUPERFAMILY DNA-binding domain 161 222 IPR016177 GO:0003677
Mal5g1973 408 PRINTS Ethylene responsive element binding protein signature 202 222 IPR001471 GO:0003700|GO:0006355
Mal5g1973 408 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Mal5g1973 408 MobiDBLite consensus disorder prediction 231 252 - -
Mal5g1973 408 Coils Coil 27 47 - -
Mal5g1973 408 CDD AP2 161 222 IPR001471 GO:0003700|GO:0006355
Mal5g1973 408 SUPERFAMILY DNA-binding domain 59 128 IPR016177 GO:0003677
Mal5g1973 408 Gene3D AP2/ERF domain 60 128 IPR036955 GO:0003700|GO:0006355
Mal5g1973 408 Gene3D AP2/ERF domain 161 222 IPR036955 GO:0003700|GO:0006355
Mal5g1973 408 ProSiteProfiles AP2/ERF domain profile. 60 126 IPR001471 GO:0003700|GO:0006355
Mal5g1973 408 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 349 - -
Mal5g1973 408 MobiDBLite consensus disorder prediction 1 27 - -
Mal5g1973 408 CDD AP2 59 127 IPR001471 GO:0003700|GO:0006355
Mal5g1973 408 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 349 - -
Mal5g1973 408 MobiDBLite consensus disorder prediction 1 61 - -
Mal5g1973 408 Pfam AP2 domain 60 118 IPR001471 GO:0003700|GO:0006355
Mal5g1973 408 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1973 Mal-Chr5 42885102 42890618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1973 156 235 AP2-EREBP Transcription Factor Family AT5G57390 39.773 8.46e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Mal5g1973 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1973 - - gmx:100527432 486.108