Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1971 ATGAAGATGTCTCCACCATCTTCAAGTTCATCATCTTCATCTTCAGTTGGATTTGAGAATTCAATTCAATCAGAGAAGAAAAGGGGTGCTAAGAATGCAAAAAAGAATCTCAATCCCAAGTCACAGAATTTGAAGCAGAAGAAGAACCAAACAAATGGTGGCAGTAGAAGAAGCTCCATTTACAGAGGAGTTACAAGACATAGGTGGACTGGGAGATTTGAAGCACATCTATGGGATAAGACTTCTTGGAACAACATTCAGAACAAGAAGGGAAAACAAGGTGCTTATGATACTGAAGAAGCAGCAGCTCGTACTTATGATCTTGCAGCACTTAAGTATTGGGGGAAGGATGCAACCTTGAATTTCCCGATGGAAACTTATGCAAAAGAGTTAGAGGAAATGGACAAAGCCTCAAAAGAAGAGTATTTGGCTTCTTTGAGGAGGCAAAGCAGTGGTTTTTCTAGAGGCATTTCTAAGTACCGTGGTGTTGCTAGGCATCATCATAATGGTCGCTGGGAAGCTCGAATTGGAAGAGTTTGTGGTAACAAGTATCTCTACTTGGGCACATACAAAACTCAAGAGGAGGCAGCAGTTGCATATGATATGGCAGCAATAGAGTACAGAGGGATGAACGCAGTGACAAATTTTGACATAAGCAACTACATGGACAAATTGAAGAAGAAAAATGATGAAACTGAACAAACAGAACCACCAACTACAACAACAGAAATAGTGTCTAATAATTCCTCGGATTCTGAAGAAGCATCAGAAGAACAAACACCAACGACACCAGCACAAGAAAATCAACTATTAATTGAACTAAAGCAGGAACAAGTTCCAAAACAACATGTTCCTCCAAGTCCAATTGTTCAAGTGGAACACACTTTAGTTAATGTTATGGATCATTATTTTGACCAAGACCTACCATGGAGCTTCATGTATAATGGGTTGTTAGAGTTTGAAGACACGAACATGGCTTTCAGCAAAGGTGGTGAAGATTTCTTAGATATATTTTATGGCTCAAGCTTTGTGGAAGACATTGGTTTGATGTTCAACACAGAAGAACCTTATGGTGCTGGTGAAAGTGATATTAACATCAATGAAGTTTTGGAGGATATTGATTGTGGAGGATTTTTAAATGGAGATGCTGGAAACATGGTTGTGGATGATGATGACAAGGAGAAGAAACTATTATCATTAGATTCTTTGTAA 1212 0.3878 MKMSPPSSSSSSSSSVGFENSIQSEKKRGAKNAKKNLNPKSQNLKQKKNQTNGGSRRSSIYRGVTRHRWTGRFEAHLWDKTSWNNIQNKKGKQGAYDTEEAAARTYDLAALKYWGKDATLNFPMETYAKELEEMDKASKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEYRGMNAVTNFDISNYMDKLKKKNDETEQTEPPTTTTEIVSNNSSDSEEASEEQTPTTPAQENQLLIELKQEQVPKQHVPPSPIVQVEHTLVNVMDHYFDQDLPWSFMYNGLLEFEDTNMAFSKGGEDFLDIFYGSSFVEDIGLMFNTEEPYGAGESDININEVLEDIDCGGFLNGDAGNMVVDDDDKEKKLLSLDSL* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1971 403 Pfam AP2 domain 60 115 IPR001471 GO:0003700|GO:0006355
Mal5g1971 403 Pfam AP2 domain 158 210 IPR001471 GO:0003700|GO:0006355
Mal5g1971 403 Gene3D AP2/ERF domain 60 125 IPR036955 GO:0003700|GO:0006355
Mal5g1971 403 Gene3D AP2/ERF domain 158 219 IPR036955 GO:0003700|GO:0006355
Mal5g1971 403 MobiDBLite consensus disorder prediction 1 62 - -
Mal5g1971 403 ProSiteProfiles AP2/ERF domain profile. 159 217 IPR001471 GO:0003700|GO:0006355
Mal5g1971 403 ProSiteProfiles AP2/ERF domain profile. 60 123 IPR001471 GO:0003700|GO:0006355
Mal5g1971 403 MobiDBLite consensus disorder prediction 228 265 - -
Mal5g1971 403 SUPERFAMILY DNA-binding domain 158 219 IPR016177 GO:0003677
Mal5g1971 403 CDD AP2 158 219 IPR001471 GO:0003700|GO:0006355
Mal5g1971 403 CDD AP2 59 123 IPR001471 GO:0003700|GO:0006355
Mal5g1971 403 MobiDBLite consensus disorder prediction 35 59 - -
Mal5g1971 403 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Mal5g1971 403 PRINTS Ethylene responsive element binding protein signature 199 219 IPR001471 GO:0003700|GO:0006355
Mal5g1971 403 SUPERFAMILY DNA-binding domain 59 125 IPR016177 GO:0003677
Mal5g1971 403 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 285 - -
Mal5g1971 403 MobiDBLite consensus disorder prediction 1 22 - -
Mal5g1971 403 SMART rav1_2 159 223 IPR001471 GO:0003700|GO:0006355
Mal5g1971 403 SMART rav1_2 60 129 IPR001471 GO:0003700|GO:0006355
Mal5g1971 403 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 6 285 - -
Mal5g1971 403 MobiDBLite consensus disorder prediction 235 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1971 Mal-Chr5 42856148 42859378 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1971 153 234 AP2-EREBP Transcription Factor Family AT5G57390 40.000 3.48e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mal5g1971 AP2 1.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1971 - - gsj:114422618 472.241