Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1969 ATGGCCGGTTTATCCTCCTCGCCTCGGCGTCGCCGTCGCCGTCACTGTCCAGAAACAACAATAACAGATTTGGACGAAGATGCCATAGCTCACTGCACCACCTTCCTCACCATCCCTGACATATGCAATCTGTCAATGACATCCACCACCCTGAAACGCCTCGCTTATTCCGATTCCATTTGGCAACGCTACTTACCGGAGCGTTTGGTTCGACAATTACCGTCTTCTTCACGTTCAATTGGAATTGGAACTGGAGCAAGGGAACTGTACATGGCTTGGCGAACTGATGTGCAACAGTTCAAGTTCCGTGACCCCTTTCTTCTCGAATTTAGCGGGTTGAGAAGAATAGACAATTTGCTTCTCCACCAAAACCATATTTATTTCACGCAGGGCTCAATTGTACAAATGATGAATTTGGATGATTATCAAATGGGAGCAGAGGATTGCTTCCGTGTGATGAATCATCACACAGACAGTATCACTTGTATGAGGGTGTTTTCCCAAGGGAATCGTAATTTCTTGGTCACCTCAAGCCGTGATCACTCGATTCGTATGTCGTGGAAGGGTCATTGCTTGCGATGCTTTAAAGGCCACAATTTTCCGGTGTCGTCACTATCAAATGAATTATTGGGAGATGATAGCAGCAGTATATTGGCAAGTGGAGGGCAAGATGGTACTGTTCGACTATGGTCCCTTAGGTCTAGTAGCGAAGAAGGGGAACATAATTTAAAGGCTACACTCCACAGGCATGAAAAACCTGTAAAATTGATGTCAGTTTCCGGGCACAATTCTTCAATGTTGGTGACCATCTGTAGAGATTCTAAGGTGATGGTTTGGGATACAGCTAGTGCTACATCATCTGCTGTTGGCTCGTCCTGTTGTGTGGGAATGACTTCTGTTTCTGGTACACCTGTAAATATGAAATGCCATGAGTCACTATGTTACGTGGCCGCTGGTTCGTCTGTCATTGCAGTTGATTTAAGGACAATGAAGAATGTTGTCACAGCTTCCGAACATCGAAATGAGATACATTCATTTGATGCTGTCCCTTCCAAGTATTTACTATGTACAGGTGGTTATAACAGAGCATTGCTATGGGATATTAGGAGAAACCAAGGATTGTTAAAACCAGAACCTTTAGCTGAGTTGGACGAGCATAAAGGTCCTGTTACTAAATTGTACATGGATCCATACAAAATAGTTACTTGTGGAAAGTATAACTCTCATGTTAAGGTATGGGAATCTGGCACTGGTGAGTTAACAAATTCGTTGCCTTGCTTTGATGGTGACCGTTGTGTTGCCATGGCTGTGGATGGTTGTAGAATAGCCACTGCTACCCGTGATGCTTTACGCTGCAGAGACTTTAACAATGCTACATGTCCTGCTATGAAACTAGAAAGTGATTGA 1407 0.4407 MAGLSSSPRRRRRRHCPETTITDLDEDAIAHCTTFLTIPDICNLSMTSTTLKRLAYSDSIWQRYLPERLVRQLPSSSRSIGIGTGARELYMAWRTDVQQFKFRDPFLLEFSGLRRIDNLLLHQNHIYFTQGSIVQMMNLDDYQMGAEDCFRVMNHHTDSITCMRVFSQGNRNFLVTSSRDHSIRMSWKGHCLRCFKGHNFPVSSLSNELLGDDSSSILASGGQDGTVRLWSLRSSSEEGEHNLKATLHRHEKPVKLMSVSGHNSSMLVTICRDSKVMVWDTASATSSAVGSSCCVGMTSVSGTPVNMKCHESLCYVAAGSSVIAVDLRTMKNVVTASEHRNEIHSFDAVPSKYLLCTGGYNRALLWDIRRNQGLLKPEPLAELDEHKGPVTKLYMDPYKIVTCGKYNSHVKVWESGTGELTNSLPCFDGDRCVAMAVDGCRIATATRDALRCRDFNNATCPAMKLESD* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1969 468 Gene3D - 301 464 IPR015943 GO:0005515
Mal5g1969 468 SUPERFAMILY WD40 repeat-like 149 448 IPR036322 GO:0005515
Mal5g1969 468 Gene3D - 128 300 IPR015943 GO:0005515
Mal5g1969 468 PANTHER E3 UBIQUITIN LIGASE COMPLEX SCF SUBUNIT SCONB-RELATED 19 463 - -
Mal5g1969 468 SMART WD40_4 329 367 IPR001680 GO:0005515
Mal5g1969 468 SMART WD40_4 376 414 IPR001680 GO:0005515
Mal5g1969 468 SMART WD40_4 146 187 IPR001680 GO:0005515
Mal5g1969 468 SMART WD40_4 188 231 IPR001680 GO:0005515
Mal5g1969 468 SMART WD40_4 240 280 IPR001680 GO:0005515
Mal5g1969 468 SMART WD40_4 417 454 IPR001680 GO:0005515
Mal5g1969 468 SUPERFAMILY F-box domain 10 82 IPR036047 GO:0005515
Mal5g1969 468 Pfam WD domain, G-beta repeat 189 231 IPR001680 GO:0005515
Mal5g1969 468 Pfam WD domain, G-beta repeat 148 185 IPR001680 GO:0005515
Mal5g1969 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 240 IPR001680 GO:0005515
Mal5g1969 468 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 195 234 - -
Mal5g1969 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 289 IPR001680 GO:0005515
Mal5g1969 468 PANTHER WD40 REPEAT PROTEIN 19 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1969 Mal-Chr5 42840122 42847071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1969 189 370 U-box Gene Family AT1G04510 26.064 3.99e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1969 - - gmx:100820412 526.168