Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1965 ATGACTGCAAACTCGGCTGAAAGACAAGTGAATGATCTAGATGGTGATGGAAATAGGAAACCACAAGTCGGCATGATGTTTGAATCTGAAGATGCTGCAAAGTCATTTTATGATGCATATGCAAGACATGTAGGATTTAGCATTGACGTTGGTCAATTCAGCTGTGCTACGGCTGACGGTCCAATTATAACTAGGGATTTTTCTTGTTCCAGTGAAGTATTAAAAAGGAAGAATGTGGTAAGCTGCAATGCAATGCTTAGGATAGAGAGAAAAGATGAAAAGTGGACAGTGACAAAATTTGTTGAGGACCACAGCCATTCTCTAGCTTCCTCTAAAATGTTGAAGCACCTTCGACCACGTAGGCATTTTGCAGGTTCTATGAGAAATGATAGAGAGACGTCTGATGCAAGTAATGATTCCCATGTTTCTATGAACAGCAATAATGGTGAACCGGTTAGTCTAGTTAGGAGTCCCTCTCCGGCAGAAAATGGTCATCCAACAAGAAACATCGGGCCTTTTGCATATGGAAGATCATTCCGAAAGAGGACTCTTGGAAGAGATGCTCAAAATCTTCTCGATTATTTTAAGAAGATGCAGGGTGAAAACCCTGGCTTCTATTACGCAATACAGCTTGATGATAAAAACCGCATGACCAATGTATTCTGGGCCGATGCAAGGTCAAGAGCAGCTTATAATCACTTCGGTGATGCGGTAACTTTTGACACAACGTATCGGCCGTATCAATATCAAGTCCCAATTGCTCCATTTACAGGAATCAATCATCACGGTCAAATCGTTTTATTCGGTTGTGCATTATTACTAGATGAATCTGAGTCTTCGTTTACATGGCTGTTCAGGACTTGGCTATCTGCTATGAATGGTCGGCCTCCCATTTCGATAACCACAGACCAAGTTAGAGCCATAAACTCAGCTGTCGCGCAGGTGTTTCCGGAAACTCGCCACTGTATCTGTAAATGGCACATTTTGCGAGAAGGTCAAGAAAGATTGGCTCATATTTATCTTGCACATCCTTCATTATATGGAGAGCTGTATAGTTGCATAATTTTCTCAAAGACAGTTGAGGATTTTGAGTCAACGTGGAAGTCTCTTCTAGATAAATATGATCTCGAAAGAAATGATTGGCTTCAAGCAGTGTATAATGCTCGCAGACAATGGGCCCCTGTTTACTTTCGTGACACATTCTTTGCTGCTTTAACTTCAAACCATGGATTAAGCTCCTTTTTCGATGGCTATATAAATCAACAGACAACCATGCCTTTATTCTTTAAGCAGTATGAAAAATCTCTCGAACATTCATTGGAAAAAGAAATAGAAGCGGATTTCGAGACCATTTCTACCAAACCATCTTTGAAGACTCCGTCACCAATGGAACAACAGGCTGCAAATTCGTACACTAGGAAGATTTTTGCAAAGTTTCAGGAAGAACTCATGAAAACTTTTACTTATACTTCAAAGAATGTTGAAGATGATGGTGTGGTCCGTAAATACAGGGTTGCAAAATATGAAGATAATCACAAGCCATACACAGTCAGTGTTGCGTTAGATAATTCTGGAGCAAAGGCAAATTGTAGTTGTCAGATGTTTGAATACTCGGGCATTCTATGTCGACATATATTGTCTGTCTTCACTGTTACAAATGTTCTTACTCTTCCATCACACTATATTTTGAAACGATGGACAAAGAATGTAAAATCCAGTGTTGGGACAGATGAAGAAATACCAGATCCACCCGGCATTGAAAATATTACTTCACGTTTTAATAATTTATGTCGAGAAGCCAGTAAGCTTGCAGAAGAAGGGGCAATAGCTGTAGAGACTTATAACGTTGCAATGGATTCCTTAAGAGAGAGTGCTAAAAGGGTTAGCGTTGTGAAGAAAAACATTGCAAAAGTTGCACCTCCGACTCCGTGCACTCGGGGTAATGTGCCTCAAGAAGACAATAGCAAGATGAGCTCTTCATCAATTTTTGACAGTGTCCCATCATCGTGGTCTTGGCCAGATTCAGTATTGCCTCACTTTAATATTTATGACATTGGACTTCCTGTTAATGGTCTGAATCATCCTTGTATCGCTCCTGCTTCTATTCACCCTAACAGTGGCCCTACACATAACCTTGTTGTCCTTACTTGTTTCAAGTCTATGACTTGGTTTATAGAAACTAAGAACTCAGACACTTCCAGTAAAGTTGCAGTGATCAACATGAAGCTGCAAGATTATAGCCAGAATCCTTCAGGAGAGACAGAAGTGCAATTCAGAGTGACGAAGGTCACTTTGGAGCCTATGTTGCAGTCTATGACTAACATTAGTCATCAGCTCACTGGACCTGTTAATAGAGTTGCTGTTATTAGTCTACAGCTCCAGGATACAAAGACAAGTACTGGGGACACAGAGTTGAAATTCCAAGTTTGCAGAGATTCGCTATGTTCCATGTTGAAATCTATGTCCTACATCATGGAGCAACTATAA 2487 0.4041 MTANSAERQVNDLDGDGNRKPQVGMMFESEDAAKSFYDAYARHVGFSIDVGQFSCATADGPIITRDFSCSSEVLKRKNVVSCNAMLRIERKDEKWTVTKFVEDHSHSLASSKMLKHLRPRRHFAGSMRNDRETSDASNDSHVSMNSNNGEPVSLVRSPSPAENGHPTRNIGPFAYGRSFRKRTLGRDAQNLLDYFKKMQGENPGFYYAIQLDDKNRMTNVFWADARSRAAYNHFGDAVTFDTTYRPYQYQVPIAPFTGINHHGQIVLFGCALLLDESESSFTWLFRTWLSAMNGRPPISITTDQVRAINSAVAQVFPETRHCICKWHILREGQERLAHIYLAHPSLYGELYSCIIFSKTVEDFESTWKSLLDKYDLERNDWLQAVYNARRQWAPVYFRDTFFAALTSNHGLSSFFDGYINQQTTMPLFFKQYEKSLEHSLEKEIEADFETISTKPSLKTPSPMEQQAANSYTRKIFAKFQEELMKTFTYTSKNVEDDGVVRKYRVAKYEDNHKPYTVSVALDNSGAKANCSCQMFEYSGILCRHILSVFTVTNVLTLPSHYILKRWTKNVKSSVGTDEEIPDPPGIENITSRFNNLCREASKLAEEGAIAVETYNVAMDSLRESAKRVSVVKKNIAKVAPPTPCTRGNVPQEDNSKMSSSSIFDSVPSSWSWPDSVLPHFNIYDIGLPVNGLNHPCIAPASIHPNSGPTHNLVVLTCFKSMTWFIETKNSDTSSKVAVINMKLQDYSQNPSGETEVQFRVTKVTLEPMLQSMTNISHQLTGPVNRVAVISLQLQDTKTSTGDTELKFQVCRDSLCSMLKSMSYIMEQL* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1965 828 Pfam FAR1 DNA-binding domain 35 109 IPR004330 -
Mal5g1965 828 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 772 IPR031052 GO:0006355
Mal5g1965 828 MobiDBLite consensus disorder prediction 641 660 - -
Mal5g1965 828 Pfam SWIM zinc finger 519 551 IPR007527 GO:0008270
Mal5g1965 828 MobiDBLite consensus disorder prediction 123 137 - -
Mal5g1965 828 Coils Coil 586 606 - -
Mal5g1965 828 MobiDBLite consensus disorder prediction 138 164 - -
Mal5g1965 828 MobiDBLite consensus disorder prediction 122 173 - -
Mal5g1965 828 Pfam MULE transposase domain 238 330 IPR018289 -
Mal5g1965 828 MobiDBLite consensus disorder prediction 1 22 - -
Mal5g1965 828 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 13 772 - -
Mal5g1965 828 SMART 26again6 528 555 IPR006564 GO:0008270
Mal5g1965 828 ProSiteProfiles Zinc finger SWIM-type profile. 515 553 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1965 Mal-Chr5 42725310 42728735 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mal5g1965 MULE 3.6e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1965 - - gmx:100789242 1253.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g5358 2 128335752 128340521 Mal5g1965 5 42725310 42728735 PCT