Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1961 ATGGGATATGGAACAAGAAAACTCATAGATGAGTATGAAGTTTCAGAAATTCTAGGTAGAGGTGGATTTTCTGTTGTTAGAAAAGGTACAAAAAAATCAAGCAATGAAGATGAAAAATCACAATCACTAGTAGCAATCAAAACACTTAGAAGAGTAAGTACCTCAAATAGTCCTAGTGGAGGATTACCAAGAAAAAAAGATGGTGGAGAAAAAAGCACAATAGGGTTCCCTACATTTAGACAAGTTTCAGTTTCAGATGCATTGTTAACAAATGAGATACTTGTAATGAGACGAATAGTCGAAAACGTTTCGCCACATCCAAATGTGATTGATCTTTATGATGTGTATGAGGACACAAATGGTGTTCATCTTGTACTTGAGCTTTGTTCTGGTGGTGAACTTTTTGATAGGATTGTAGCACAAGATAAGTATAGTGAGACTGAAGCTGCAATTGTGGTTCATCAAATTGCAAAAGGGTTAGAAGCTATTCATAGAGCTAACATTGTTCATAGAGATTTGAAGCCTGAAAATTGTCTTTTTTTAGATGTTAGGAAAGATTCTCCTCTTAAGATTATGGATTTTGGATTGAGTTCTGTTGAAGAGTTTACTGATCCTGTTGTTGGTTTGTTTGGATCTATTGATTATGTTTCACCTGAGGCTCTTTCTCAAGGAAAGATTACTACTAAGAGTGATATGTGGTCTCTTGGAGTTATTCTATATATCTTACTTTCTGGGTATCCACCTTTCATTGCCCAAAATAATCGCCAAAAACAACAAATGATAATGAATGGGAATTTTAGTTTTTATGAGAAGACTTGGAAGGGAATTTCACAATTAGCAAAGAATTTGATTTCAAGTCTTCTAACTGTTGATCCTAGTAAGAGACCAAGTGCTCAAGAGCTTTTAAGTGATCCTTGGGTCAAAGGTGAGAAAGCAAAAGATGATCAAATGGACCCTGAAATTGTCTCAAGGCTACAAAGCTTTAATGCAAGACGCAAACTTCGTGCAGCTGCAATTGCTAGTGTTTGGAGCTCCACAATCTTCCTTAGAACCAAAAAATTGAAATCATTGGTTGGATCCTATGATCTCAAAGAAGAGGAAATTGAGAATCTCAGGATGCATTTCAAGAAGATATGTTCAGATAGAGACAATGCAACTCTCCCTGAGTTTGAGGAGGTGTTAAAAGCAATGAATATGTCATCATTGATCCCTTTTGCTTCTCGTATATTTGACTTGTTTGACAACAACCGTGATGGAACAGTTGACATGCGAGAGATACTTTGTGGTTTTTCAAGTCTCAAAAACTCCAAAGGAGAGGATGCTCTTCGTTTGTGCTTCCAGATGTATGATACAGATAGATCAGGCTGCATCAGCAAAGAAGAAGTAGCATCTATGCTCAGAGCTTTGCCATATGATTGTCTTCCAACTGATATCACTGAACCTGGAAAATTGGATGAGATTTTTGACTTAATGGATGCTAATAATGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCCATGCAAAGAGATAGCTCTCTTCAAGATGTAGTTCTCTCTTCTCTTCGTCCATAA 1575 0.3657 MGYGTRKLIDEYEVSEILGRGGFSVVRKGTKKSSNEDEKSQSLVAIKTLRRVSTSNSPSGGLPRKKDGGEKSTIGFPTFRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDTNGVHLVLELCSGGELFDRIVAQDKYSETEAAIVVHQIAKGLEAIHRANIVHRDLKPENCLFLDVRKDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQNNRQKQQMIMNGNFSFYEKTWKGISQLAKNLISSLLTVDPSKRPSAQELLSDPWVKGEKAKDDQMDPEIVSRLQSFNARRKLRAAAIASVWSSTIFLRTKKLKSLVGSYDLKEEEIENLRMHFKKICSDRDNATLPEFEEVLKAMNMSSLIPFASRIFDLFDNNRDGTVDMREILCGFSSLKNSKGEDALRLCFQMYDTDRSGCISKEEVASMLRALPYDCLPTDITEPGKLDEIFDLMDANNDGKVTFDEFKAAMQRDSSLQDVVLSSLRP* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1961 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Mal5g1961 524 Pfam EF-hand domain pair 440 509 IPR002048 GO:0005509
Mal5g1961 524 Gene3D Phosphorylase Kinase; domain 1 7 50 - -
Mal5g1961 524 SUPERFAMILY EF-hand 352 513 IPR011992 -
Mal5g1961 524 Pfam EF hand 409 425 IPR002048 GO:0005509
Mal5g1961 524 Gene3D Phosphorylase Kinase; domain 1 76 133 - -
Mal5g1961 524 ProSiteProfiles Protein kinase domain profile. 12 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g1961 524 ProSiteProfiles EF-hand calcium-binding domain profile. 437 472 IPR002048 GO:0005509
Mal5g1961 524 ProSitePatterns Protein kinases ATP-binding region signature. 18 47 IPR017441 GO:0005524
Mal5g1961 524 SUPERFAMILY Protein kinase-like (PK-like) 6 326 IPR011009 -
Mal5g1961 524 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Mal5g1961 524 MobiDBLite consensus disorder prediction 52 74 - -
Mal5g1961 524 Gene3D Transferase(Phosphotransferase) domain 1 134 326 - -
Mal5g1961 524 PANTHER SERINE/THREONINE-PROTEIN KINASE 15 509 - -
Mal5g1961 524 PANTHER CALCIUM AND CALCIUM/CALMODULIN-DEPENDENT SERINE/THREONINE-PROTEIN KINASE 15 509 - -
Mal5g1961 524 Gene3D - 327 519 - -
Mal5g1961 524 CDD EFh 442 509 IPR002048 GO:0005509
Mal5g1961 524 ProSiteProfiles EF-hand calcium-binding domain profile. 479 514 IPR002048 GO:0005509
Mal5g1961 524 CDD STKc_CAMK 12 306 - -
Mal5g1961 524 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Mal5g1961 524 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Mal5g1961 524 Pfam Protein kinase domain 90 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g1961 524 SMART efh_1 405 433 IPR002048 GO:0005509
Mal5g1961 524 SMART efh_1 441 469 IPR002048 GO:0005509
Mal5g1961 524 SMART efh_1 483 511 IPR002048 GO:0005509
Mal5g1961 524 ProSitePatterns EF-hand calcium-binding domain. 492 504 IPR018247 -
Mal5g1961 524 SMART serkin_6 12 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1961 Mal-Chr5 42680672 42685990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1961 88 512 EF-hand Containing Proteins AT3G10660 36.842 2.03e-77 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Mal5g1961 Pkinase 5.1e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1961 K13412 - gmx:732616 887.871