Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1956 ATGCCAAACATTTATACACCAATCTCAGCCGTTTCCGGTGGGAAGAAAATCTTGAAGATGATCGTTCGTGTGTCTCATATATGGTGCATACATGATAAAGATAAGCCTGATGATATAACCTTCATGAATATGTTGTTGGTGGATGAGAAGTCTGGCAAAATCCACGCTACTGTTCGAAAAACATTGGTGCCAAAAATCAAACCAATGGTTGAAGAGGGTTCCACTTATATTTTGGAGAATGCAATGGTTGGTTTCAATGAAGGTTCTTTTAAGCTCACACCCCACAAATACAAGCTGAATATGATGCTTAATTCGAATTTTACTAAAGTGAACGCTAACAAGATTCCTAAGAACGTTTTTGACTTTGTGTCCTTTAAAAATATTTTGCAATCGGATGAGGAAGATAAGATAACCGATGTTATCGGACATGTGGTCGAAAAGGATACTATTCGTGAGAATGAGAAAAGCATGAGAAAAAGCAAAGTCATCGATCTCACCTTGGAAGATTTGGAGCAAAATAGAATTCATTGCTCTCTATGGGGTGAATTTGCTGAGAGAATCGAACAATATTTTGCTACTCATGATAAATCATCGGCTGTGGTTTTGATTTTGCAGTTTTGCAAAACAAGGAAGTATATGGGCGCAATGGGTGTTGCTAACTCATTCTTTGGCTCAACAGTGATTATAAATGGCGATTTACCAGAAGTTGAAGATTACAAAACAAAGTATGATGACCGATAA 741 0.3725 MPNIYTPISAVSGGKKILKMIVRVSHIWCIHDKDKPDDITFMNMLLVDEKSGKIHATVRKTLVPKIKPMVEEGSTYILENAMVGFNEGSFKLTPHKYKLNMMLNSNFTKVNANKIPKNVFDFVSFKNILQSDEEDKITDVIGHVVEKDTIRENEKSMRKSKVIDLTLEDLEQNRIHCSLWGEFAERIEQYFATHDKSSAVVLILQFCKTRKYMGAMGVANSFFGSTVIINGDLPEVEDYKTKYDDR* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1956 246 CDD RPA1_DBD_B_like 139 241 - -
Mal5g1956 246 CDD RPA1_DBD_A_like 19 110 - -
Mal5g1956 246 Pfam Domain of unknown function DUF223 44 130 IPR003871 -
Mal5g1956 246 PANTHER REPLICATION FACTOR A 1, RFA1 18 226 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal5g1956 246 SUPERFAMILY Nucleic acid-binding proteins 120 243 IPR012340 -
Mal5g1956 246 SUPERFAMILY Nucleic acid-binding proteins 5 109 IPR012340 -
Mal5g1956 246 Gene3D - 113 246 IPR012340 -
Mal5g1956 246 Gene3D - 3 109 IPR012340 -
Mal5g1956 246 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 18 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1956 Mal-Chr5 42530125 42531255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1956 43 244 Core DNA Replication Machinery Family AT5G08020 25.837 1.01e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1956 - - mtr:MTR_7g451880 302.753