Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1952 ATGTATACTAGTAAAGATGATAATAAACTTAGAAGGGGACCTTGGACTCTTGAAGAGGATGATCTCCTCATCAAACACATTGCTAATCATAGTGAAGGGAGATGGAATTTCTTGGCTATGAGTTCAGGATTAAGGAGGACAGGAAAGAGCTGTATATTAAAATGGCTAAATTATTTAAAGCCAGATATAAAGAGTGAAAACTTAACTCCAGAAGAAAAGTTTCTGATTTTTGAACTCCGCTCAAAGTGGGGCAACGAGTGGTCAAGGATTGCACAAAACTTGACAGGAAGAACAGACAATGAAATCAAAAACTATTGGAGAACATGTCGAAAACAAGCAAGCCGTTTGAAGTTTTACACAAATGGAAGAGGATTTCTAGGACTTCTTAATCCTTTAAGAATAATAACATGTCATCAAAAATCAAAAGAATCATCAAATTCAACCATGACCATCCAAAACCAATCAATTCCTTTGCCACTTGATGGTGTTACTCATTAG 498 0.3574 MYTSKDDNKLRRGPWTLEEDDLLIKHIANHSEGRWNFLAMSSGLRRTGKSCILKWLNYLKPDIKSENLTPEEKFLIFELRSKWGNEWSRIAQNLTGRTDNEIKNYWRTCRKQASRLKFYTNGRGFLGLLNPLRIITCHQKSKESSNSTMTIQNQSIPLPLDGVTH* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1952 165 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Mal5g1952 165 Gene3D - 68 109 - -
Mal5g1952 165 CDD SANT 69 108 IPR001005 -
Mal5g1952 165 SMART sant 11 61 IPR001005 -
Mal5g1952 165 SMART sant 64 112 IPR001005 -
Mal5g1952 165 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 145 IPR044676 GO:0003700|GO:0006355|GO:0043565
Mal5g1952 165 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Mal5g1952 165 CDD SANT 14 59 IPR001005 -
Mal5g1952 165 PANTHER OS01G0128000 PROTEIN 4 145 - -
Mal5g1952 165 Pfam Myb-like DNA-binding domain 15 73 - -
Mal5g1952 165 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 114 IPR017930 -
Mal5g1952 165 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Mal5g1952 165 Gene3D - 3 65 - -
Mal5g1952 165 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1952 Mal-Chr5 42500911 42501764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1952 7 150 MYB Transcription Factor Family AT1G68320 56.552 3.10e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g1952 Myb_DNA-bind_6 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1952 K09422 - gmx:778045 219.55