Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1829 ATGTCGAGGGATTTTAGTTATATCAAAGATTTGAAGAAGGATTTGGATATCTGCAAACTTGGTTTTAGAGTTCTTGATTCATGGACCGTCACTGCTAGCAATGGTCGACAACACTTGGAACTTATAATAGGTGATGCCAAGGGTGATCGAGTTCATGTTGTGACTCGATATGCAAACTTTGAGTATTTGAAGTCATTTATTGAAGAGAATCATACTTATGTTTTGCATAATTGTCTTGTGTTCGATAATGATGTTGCGTTCAAGCCCGTTGATTATCCTTTTAAGGTTGTTTTTGGTGCTGGTACAAAGGTGACGAAAAATGACAACCTCACCGATATTCCTTCTCATGAATTTAGATTTAAGTCATTCAAGGAGATTGAAGAGGGAAAATTTAAGACGGATGTTTTATATGAAATCATCGGTCTTATACATGAGATTCGTAAGGTAACGGTAATTGGAAGTGGAAAAAAGCCTTGCACTAATATTGTGTTGAAAGATGAAAGTGGAAAGTTGGTTGATGTGACATTATGGGATCGATATTCTCTGGATTTATCGAAATATTTTGCTGAGCGAAAGGATACAGGGCCAGTTGTTTTGATATTAACTCATGCTCAATGCAAATTTGCAGATAATGGTAAGCCAAATCTTTGCAACAATTGGTCAGGTTCAAAGTTGCTTATTAATTTTAAGCATCATGTCGTTGAGACGTTTAGAGCTAGTTTTCGTACTGAAGGTCATGCTCTTAGTCAGAGTTTGTGTCAGGGTTCGTCTTCTTCTAAACGTTTTAAGGACGATGAATTTTCAAACCTCTCAAATGTTAGACCAATTTCTGAGTTTAGAGATTTAGTTCAGGAAACTTATTGCATCACTGTTGGGAGAATTTTTAAGTTCAATCCTAATCAATTTGGATGGTATTATGAAAGTTGTACTAAATGTGCAAAAGCTGCAAAGTTAAATGGTGCGAGTTACAAATGTTCATGTGGAGAGGAATATTTGGTTCCATTGACTAGATATAAGGTGGTTGTGCAAGTAGTATATGATGGTAATAGAGCTGATTTTTTATTCTGGGACAAGGAATGTCTTCAGATACTTGGTGTTACTGCTGATGCTCTTAGAAAGTCAATGCAAGAGGTTGGTGAAGATGATCCTAAGATATATCCTAAACATCTAGACAAATTGCTTGGACTTGAGCTTGTGATGCGTGTAAAGTATCAACCATATTATCGTCAAGCATCTGTTTTAAGTTTTTCACGTGATTCTGTTGTTATTGAGAAAATTAAGTCTCACATTCATCCTGATGAAATTCAGCCAGAGGTGCAAGAGGTTGATGAGAGTATTGTCTCCAATAATGCAACTGGATCATCTCAATCTGAAAAATTGAGTGATTCTACTGAATGTTCAAAAGCTGTTTATGTTCGTACGAATGTTGTGTGCAATGATTCAACTCAATCAGTGAAACTTGAGAAGATGGGTTCTTATGCTAAATGCTCCAATTCAGTTCCTATTTCTATGAATATTGTTTGCGATAACCCAATTCAGTCAATAAAGGTTGAGAAGATGGTTTCTTCTGCTGAATGCTTGAAATCAGATTGCCCTTCTATGGTATGTTTAATTCATTATTTCAAATGA 1629 0.3579 MSRDFSYIKDLKKDLDICKLGFRVLDSWTVTASNGRQHLELIIGDAKGDRVHVVTRYANFEYLKSFIEENHTYVLHNCLVFDNDVAFKPVDYPFKVVFGAGTKVTKNDNLTDIPSHEFRFKSFKEIEEGKFKTDVLYEIIGLIHEIRKVTVIGSGKKPCTNIVLKDESGKLVDVTLWDRYSLDLSKYFAERKDTGPVVLILTHAQCKFADNGKPNLCNNWSGSKLLINFKHHVVETFRASFRTEGHALSQSLCQGSSSSKRFKDDEFSNLSNVRPISEFRDLVQETYCITVGRIFKFNPNQFGWYYESCTKCAKAAKLNGASYKCSCGEEYLVPLTRYKVVVQVVYDGNRADFLFWDKECLQILGVTADALRKSMQEVGEDDPKIYPKHLDKLLGLELVMRVKYQPYYRQASVLSFSRDSVVIEKIKSHIHPDEIQPEVQEVDESIVSNNATGSSQSEKLSDSTECSKAVYVRTNVVCNDSTQSVKLEKMGSYAKCSNSVPISMNIVCDNPIQSIKVEKMVSSAECLKSDCPSMVCLIHYFK* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1829 542 Pfam Domain of unknown function DUF223 40 136 IPR003871 -
Mal5g1829 542 Gene3D - 252 429 IPR012340 -
Mal5g1829 542 PANTHER REPLICATION FACTOR A 1, RFA1 16 406 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal5g1829 542 Gene3D - 111 251 IPR012340 -
Mal5g1829 542 SUPERFAMILY Nucleic acid-binding proteins 118 249 IPR012340 -
Mal5g1829 542 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 16 406 - -
Mal5g1829 542 Gene3D - 3 106 IPR012340 -
Mal5g1829 542 SUPERFAMILY Nucleic acid-binding proteins 284 405 IPR012340 -
Mal5g1829 542 SUPERFAMILY Nucleic acid-binding proteins 4 113 IPR012340 -
Mal5g1829 542 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1829 Mal-Chr5 37786965 37791213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1829 113 380 Core DNA Replication Machinery Family AT5G61000 25.614 2.22e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1829 - - mtr:MTR_6g464080 697.197