Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1740 ATGGCATTGAGTAATCCACTCTTTGATGATCTAAGGAGAAACAATGATGTTGATCCTGCTCAAAATAAAGAGTCAACGGATGTTGGTGAATTTGTAAACGATCCTGCACAAACTACTCCTAAACCTACCGGGACTGTTTTAAGCAGTGTTAGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCGATCCATCAGTGTTCGAATGGTCACACTATATGCTCAGATTGCAAACCTAGAGTACATAACCGGTGCCCTACTTGTAGGCATGAGCTGGGAAATATTAGATGTCTAGCACTGGAGAAGGTGGCTGCATCTTTTGCGCTCCCTTGTAAATATAAAGATTTTGGGTGCATTGGTATATATCCATACTACAACAAACCAGAACATGAATCTCAATGTTTATATAGACCCTATAACTGTCCATATGCTGGTTCAGAATGCTCCATTGTGGGTGATATACCCTACCTGGTGACCCATTTGAAAGAAGATCACAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGTTATGTCAAATCAAATCCTCAAGATGTTGAAAATGCCACATGGATGTTAACGGTTTTCAGCTGTTTTGGTAAGTACTTTTGTCTACATTTCGAAACTTTTCAACTTGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGAAGATAACGAGGCAAAAAATTATAGCTACAGTCTAGAGGTAGGTGGAAACGGGAGGAAGATGGTTTGGCAGGGAGTGCCAAGAAGCATCAGGGAAAGCCATAGCAAGATTCGCGACAGTTTTGACGGTCTCATTATTCAGAGGAATATGGCGCTTTTCTTTTCAGGTGGTGACCAGAAAGAGTTGAAGCTAAGGGTTACTGGTAGGATTTGGAAAGAACAATGA 915 0.4164 MALSNPLFDDLRRNNDVDPAQNKESTDVGEFVNDPAQTTPKPTGTVLSSVSELLECPVCLNAMYPPIHQCSNGHTICSDCKPRVHNRCPTCRHELGNIRCLALEKVAASFALPCKYKDFGCIGIYPYYNKPEHESQCLYRPYNCPYAGSECSIVGDIPYLVTHLKEDHKVDMHNGSTFNHRYVKSNPQDVENATWMLTVFSCFGKYFCLHFETFQLGMAPVYIAFLRFMGEDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRESHSKIRDSFDGLIIQRNMALFFSGGDQKELKLRVTGRIWKEQ* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1740 304 SUPERFAMILY RING/U-box 48 96 - -
Mal5g1740 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mal5g1740 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Mal5g1740 304 MobiDBLite consensus disorder prediction 1 42 - -
Mal5g1740 304 PANTHER OS07G0659800 PROTEIN 1 304 - -
Mal5g1740 304 SUPERFAMILY TRAF domain-like 112 301 - -
Mal5g1740 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 108 IPR013083 -
Mal5g1740 304 CDD RING-HC_SIAHs 54 92 - -
Mal5g1740 304 MobiDBLite consensus disorder prediction 26 42 - -
Mal5g1740 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 304 - -
Mal5g1740 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Mal5g1740 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Mal5g1740 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1740 Mal-Chr5 34508929 34510470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1740 30 304 C3H Transcription Factor Family AT2G41980 70.397 5.09e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1740 K04506 - gmx:100793457 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g5159 2 121306051 121308274 Mal5g1740 5 34508929 34510470 PCT